Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0066 ATGACCACACTACTGAATACAGTGTGTCCAACTTCAAATTTACCCTTAAACTCGAAACGAAACAGTTGCAGTTTCTTAAATACCCGTGTTCAAAACCCTAATAGTTGCAGTTTCCCTTTCAAGAAAATTTGTTTTTCAAGTGTGTTGGCTTCGACCCGTAAGACAAATCTCTCTAAAGATTATGTTTTTGACCTGCCAAATTGGAGAGATGGGAAGAATGACTATAACAGCAGGGAAGTTAGATTGACTGATGCATTTCTTCATTTAGAGCGCATGGTGGGTAAGGGTAATAAACCTAAGGTAACTCAAGTAACTCAGCTTTTGTATGATCTTTGTAAGTCTGGTAAAGTTAGAAAAACTGTTAGGCTTATAGAGATTATGTTAAGTTCAGGTATTACACCTGATGCTGTTTCATATGCGTATTTGGTCAATTATTTGTGTAGGAAAGGTAATGTTGGTTATGCAATGCAATTGGTTGAAAAGATGGAAGCAAATGGTTATCCAACTAATACTGTTACCTATAATGCTTTGGTTAAAGGGTTTTGTGTTCATGGGAAATTGAATCAGAGTATGCAGATTTTAGATAGGTTGATAAAGAAGGGTCTTGTCCCAAATGCAGTTACATATTCTATCTTGGTTGAAGCTGCTTATAAAGAAAGGGGAGTACATGAAGCCATGAAGCTTCTAGATGAGATAATTGCCAAGGGCGGTAAGCCTAATTTGGTTAGCTACAATGTGTTGCTGACTGGGTTGTGTAAGGAAGGTAGAACTGAAGAAGCTATTAAGCTTTTTAGAGAATTGCCCGCAAAAGGGTTTAAACCTTGTCTTGTGAGTCATAACATTTTGTTAAGAAGATTGTGCTATGATGGGCGATGGGAGGAAGCATACGAGCTTTTAACAGAGATGGATAGAGAGGGCAAGGGTCTTTCTGTAGTTACTTACAACATACTGATCACTTCTCTTTCTATTGATGGAAAAATTGAACAGGCTTTCCAAGTTTTAGATGAAATGACAAAGAGTGGATTCAAGGTGACTGCTCATAGCTATAATCCAATTGTTGCTCAACTCTGCAATGAAGGAAAGGTGGATCTTGTTGTTGAGTGTCTAGACCAAATGATTAATCGGCGTCTTCATCTTAATGTAGGAACGTACAATGCTATTGCCTTGCTTTGTGAGCGAGGGAAGGTGAAGGAGGCTTTCTCAATATTTGATAACTTGGGTAAAAAACAAAACTACCCTATTCATGATTTCTTCCAAAATATGATTACATTCTTGTGTAGGAAAGGGAATACATATTCGGCCTTTCAGTTATTATATGAAATGACGATGCATGGATTTACACCAGAATCCTATACTTACTCGTCTTTGTTAAGAGGATTGTGTAGGGAGGGAATGCTTGATGAGGCTCTCGAGATATTCGGGATTTTGGAAGACCATGACTATGTGCCTCATGTTAATAACTATAATGCTCTTATTCATGGATTTTGCAAATCTCAGAGAATAGACTTGTCAATAGAGATATTTCAGATGATGGTCAACAAAGGATGTATGCCTAATGAGGTAACATATACCATTCTTGTTGAAGGGCTGGCTTTTGAAGAAGAACTGGATTTAGCGGCTAACCTATTGAAAGAGTTATATCTGAAAGGGGTTCTGGGTCATCGTACTGTCAAAAGACTTTCTATGCAATACAACCTCAAGGAGTTAACAGGGTAG 1716 0.3782 MTTLLNTVCPTSNLPLNSKRNSCSFLNTRVQNPNSCSFPFKKICFSSVLASTRKTNLSKDYVFDLPNWRDGKNDYNSREVRLTDAFLHLERMVGKGNKPKVTQVTQLLYDLCKSGKVRKTVRLIEIMLSSGITPDAVSYAYLVNYLCRKGNVGYAMQLVEKMEANGYPTNTVTYNALVKGFCVHGKLNQSMQILDRLIKKGLVPNAVTYSILVEAAYKERGVHEAMKLLDEIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIKLFRELPAKGFKPCLVSHNILLRRLCYDGRWEEAYELLTEMDREGKGLSVVTYNILITSLSIDGKIEQAFQVLDEMTKSGFKVTAHSYNPIVAQLCNEGKVDLVVECLDQMINRRLHLNVGTYNAIALLCERGKVKEAFSIFDNLGKKQNYPIHDFFQNMITFLCRKGNTYSAFQLLYEMTMHGFTPESYTYSSLLRGLCREGMLDEALEIFGILEDHDYVPHVNNYNALIHGFCKSQRIDLSIEIFQMMVNKGCMPNEVTYTILVEGLAFEEELDLAANLLKELYLKGVLGHRTVKRLSMQYNLKELTG* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0066 571 Gene3D Tetratricopeptide repeat domain 304 389 IPR011990 GO:0005515
Psa1g0066 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Psa1g0066 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Psa1g0066 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 449 483 IPR002885 -
Psa1g0066 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Psa1g0066 571 Pfam PPR repeat family 170 215 IPR002885 -
Psa1g0066 571 Pfam PPR repeat family 420 462 IPR002885 -
Psa1g0066 571 Pfam PPR repeat family 310 350 IPR002885 -
Psa1g0066 571 Pfam PPR repeat family 483 531 IPR002885 -
Psa1g0066 571 Pfam PPR repeat family 239 287 IPR002885 -
Psa1g0066 571 TIGRFAM PPR: pentatricopeptide repeat domain 137 168 IPR002885 -
Psa1g0066 571 TIGRFAM PPR: pentatricopeptide repeat domain 451 483 IPR002885 -
Psa1g0066 571 TIGRFAM PPR: pentatricopeptide repeat domain 172 206 IPR002885 -
Psa1g0066 571 TIGRFAM PPR: pentatricopeptide repeat domain 242 274 IPR002885 -
Psa1g0066 571 TIGRFAM PPR: pentatricopeptide repeat domain 277 306 IPR002885 -
Psa1g0066 571 TIGRFAM PPR: pentatricopeptide repeat domain 488 520 IPR002885 -
Psa1g0066 571 TIGRFAM PPR: pentatricopeptide repeat domain 312 345 IPR002885 -
Psa1g0066 571 TIGRFAM PPR: pentatricopeptide repeat domain 347 380 IPR002885 -
Psa1g0066 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 240 274 IPR002885 -
Psa1g0066 571 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 570 - -
Psa1g0066 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Psa1g0066 571 Gene3D Tetratricopeptide repeat domain 390 476 IPR011990 GO:0005515
Psa1g0066 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 484 518 IPR002885 -
Psa1g0066 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 239 IPR002885 -
Psa1g0066 571 Pfam PPR repeat 131 163 IPR002885 -
Psa1g0066 571 Gene3D Tetratricopeptide repeat domain 70 162 IPR011990 GO:0005515
Psa1g0066 571 Gene3D Tetratricopeptide repeat domain 477 548 IPR011990 GO:0005515
Psa1g0066 571 Gene3D Tetratricopeptide repeat domain 233 303 IPR011990 GO:0005515
Psa1g0066 571 Gene3D Tetratricopeptide repeat domain 163 232 IPR011990 GO:0005515
Psa1g0066 571 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 570 - -
Psa1g0066 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 135 169 IPR002885 -
Psa1g0066 571 SUPERFAMILY HCP-like 139 335 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0066 107 557 Glycosyltransferase AT1G05670 26.106 1.00e-54 196
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0066 1 4441332 4444558 Psa1g0066 1 4441332 4444558 ECH