Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0057 ATGAGCAACATAAGCATGGTTGAAGCAAAGCTTCCACCAGGGTTCAGATTTCATCCTAGAGATGAAGAACTTGTGTGTGATTACTTGATGAAGAAGGTTACTCATAGTGATTCTCTTCTCATGATTGATGTTGATCTTAACAAGTGTGAACCATGGGATATTCCTGAAGCGGCATGTGTGGGAGGAAAAGAATGGTATTTCTATACACAAAGAGATCGAAAATATGCAACAGGCCTACGCACAAATCGTGCAACTGCGTCGGGCTATTGGAAGGCCACTGGAAAAGACAGATCTATCCTTCGAAAGGGCACTCTTGTTGGCATGAGAAAGACTTTAGTGTTCTATCAAGGAAGGGCACCAAAAGGAAGAAAAACTGAATGGGTTATGCATGAGTTTCGCATTGAAGGTCCTCATGGCCCTCCTAAATTTTCTTCTTCTAAGGAAGATTGGGTATTGTGTAGGGTATTCTACAAAAACAGAGAAGTTGCCACAAAAGCAAGCATGGGTAGTTGCTATGATGACACAGGCTCTTCATCACTTCCAGCATTAATGGATTCATACATCAGTTTTGATCACCAAGCTCAATTCCACACAGACGAATATGAGCAAGTGCCCTGCTTCTCCATTTTCTCTCAAAACCAAATGAATCCATTCTTCAACCATACAACAACAAACATGGAGCCAAAACTACCTACACTCAACAATAACAACAATCCAACAACTACATTTGGAGGAGCACCTTATAGCTTAGATCCTCTGTCTTGTGATAGAAAAGTTCTGAAAGCTGTTTTGAGTCAACTCTCAAAAATGGAAAGAAACACTCTTGATAATAATGCTAATAGTAATCAAAATCTAAAAGGATCGTCACCAAGCTTAGGTGAAGGAAGTTCTGAGAGTTACTTATCTGAAGTGGGTATGCCCCATATGTGGAATAGTTACTAA 942 0.4013 MSNISMVEAKLPPGFRFHPRDEELVCDYLMKKVTHSDSLLMIDVDLNKCEPWDIPEAACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRSILRKGTLVGMRKTLVFYQGRAPKGRKTEWVMHEFRIEGPHGPPKFSSSKEDWVLCRVFYKNREVATKASMGSCYDDTGSSSLPALMDSYISFDHQAQFHTDEYEQVPCFSIFSQNQMNPFFNHTTTNMEPKLPTLNNNNNPTTTFGGAPYSLDPLSCDRKVLKAVLSQLSKMERNTLDNNANSNQNLKGSSPSLGEGSSESYLSEVGMPHMWNSY* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0057 313 MobiDBLite consensus disorder prediction 273 300 - -
Psa1g0057 313 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 279 - -
Psa1g0057 313 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
Psa1g0057 313 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Psa1g0057 313 MobiDBLite consensus disorder prediction 273 298 - -
Psa1g0057 313 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Psa1g0057 313 PANTHER NAC (NO APICAL MERISTEM) DOMAIN TRANSCRIPTIONAL REGULATOR SUPERFAMILY PROTEIN 3 279 - -
Psa1g0057 313 SUPERFAMILY NAC domain 2 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0057 Psa-Chr1 3375349 3379902 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0057 2 311 NAC Transcription Factor Family AT1G56010 59.633 2.56e-129 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa1g0057 NAM 1.7e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0057 1 3375349 3379902 Psa1g0057 1 3375349 3379902 ECH