Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1536 ATGCAGGAAACTAGAGACCCTGCAATTAAACTCTTCGGCCAGAAGATTCCTTTGCCCGGTGAAGGTGAGCTTCTTGCCTTTGCCGTCGCCGATCCCGACCACTCTGAATCTCCGAGCTCCATGGAGGTGGACACACAAGAAGGAGGAGACGGTGATGATGGAGAGCAACAGAATTCAGAAGAGGAGAAGGACGAAGATGACAAGGATCATTCAGCTGGAAACGCTGCAGACAAAAAGAAAGAGGCTGATAATCCTCCATACGCAGAAGAGACTAAGAATCCAGACTCATCGGCAGAAGCTAGTGTGAACCCGAAAACGCCTTCCAAAGATGAAGAGACTGCAAAATCAAAAAGTGACAACTCGGAGAAGGAGAAAAGTGATGCAGCTAACCCGCAAGAGAACCTGAAGAAGCCGGATAAAATACTTCCATGTCCTCGCTGCAACAGCATGGACACCAAATTCTGTTACTACAATAACTACAACATCAATCAGCCTCGTTATTTCTGCAAAGCCTGCCAAAGATACTGGACTGCAGGCGGTACCATGAGGAATGTACCAGTAGGGGCAGGTCGGCGAAAGAACAAGAACTCTTCTTCCCATTATCGCCACATCAGCATTTCAGAGGCTCTACAAGCGGCTAGAATTGATGCTTCAAATGGGGCTCATCTTCCTGCGTTAAAGGGAAATGGCAGAGTCCTCAGTTTTGGATTAGATGCACCTATTTGTGACTCTATGGCGTCTGTCCTGAATCTTGCAGAGAAAAAGGTCCTAAATGGTGTGCGAAACGGCTTTCATGTCAAAGGTGTTGAAACTGGTGGTTGTGATGACTGCTCAAGTGCATCTTCCATTACAGTTTCAAATTCTATGGAAGAAAGCGGCAAAAGTGTTTGCCAAGAATCATTGCTCAAAACTAATGGTTTTTCCCCACCAATCCCTTGTCTTCCTGGGGTTCCCTGGCCTTATCCTTGGAATGCTCCAGTCCCTTCACCTCCTATGTGCCCTCCAGGATTTCCTTTGTCATTCTATCCTGCAGCTTTTTGGAACTGTGGGGTGCCAGGAAATTGGAATATACCCTGGTTTCCCCCACACCCCTCTGCTCAAAACCCAATATCTCCCACCAGCACTCCAAATTCTCCAACATTAGGGAAGCACTCGAGGGAAGGTGATGTGATCAGAACAGACAACTCCCAGAAAGATGAACCATCAAAGCCGAGAAATGGGTGTGTTCTGGTTCCTAAAACCTTGAGAATTGATGATCCAAGTGAAGCTGCAAAGAGTTCCATATGGGCAACTCTCGGAATCAAGAATGAATCAGCCAGTGGAGGAGGTATGTTTAAGGCCTTCCAATCTAAGAAGGACGACAAGGATCATGTTGTTGAAGCCTCACTGGTGTTGCGGGCTAACCCTGCAGCCTTATCTAGATCCCTTAACTTTCATGAGAACTCCTGA 1449 0.47 MQETRDPAIKLFGQKIPLPGEGELLAFAVADPDHSESPSSMEVDTQEGGDGDDGEQQNSEEEKDEDDKDHSAGNAADKKKEADNPPYAEETKNPDSSAEASVNPKTPSKDEETAKSKSDNSEKEKSDAANPQEKXLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSSSHYRHISISEALQAARIDASNGAHLPALKGNGRVLSFGLDAPICDSMASVLNLAEKKVLNGVRNGFHVKGVETGGCDDCSSASSITVSNSMEESGKSVCQESLLKTNGFSPPIPCLPGVPWPYPWNAPVPSPPMCPPGFPLSFYPAAFWNCGVPGNWNIPWFPPHPSAQNPISPTSTPNSPTLGKHSREGDVIRTDNSQKDEPSKPRNGCVLVPKTLRIDDPSEAAKSSIWATLGIKNESASGGGMFKAFQSKKDDKDHVVEASLVLRANPAALSRSLNFHENS 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1536 483 ProSitePatterns Zinc finger Dof-type signature. 145 181 IPR003851 GO:0003677|GO:0006355
Prci9g1536 483 MobiDBLite consensus disorder prediction 1 143 - -
Prci9g1536 483 MobiDBLite consensus disorder prediction 363 409 - -
Prci9g1536 483 Pfam Dof domain, zinc finger 140 197 IPR003851 GO:0003677|GO:0006355
Prci9g1536 483 MobiDBLite consensus disorder prediction 105 141 - -
Prci9g1536 483 ProSiteProfiles Zinc finger Dof-type profile. 143 197 IPR003851 GO:0003677|GO:0006355
Prci9g1536 483 PANTHER CYCLIC DOF FACTOR 2 1 483 IPR045174 GO:0003700|GO:0006355
Prci9g1536 483 MobiDBLite consensus disorder prediction 63 88 - -
Prci9g1536 483 MobiDBLite consensus disorder prediction 46 62 - -
Prci9g1536 483 MobiDBLite consensus disorder prediction 386 402 - -
Prci9g1536 483 MobiDBLite consensus disorder prediction 90 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1536 Prci-Chr9 28172800 28176160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1536 1 481 C2C2-Dof Transcription Factor Family AT3G47500 50.000 2.23e-127 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Prci9g1536 zf-Dof 2.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1536 - - qsa:O6P43_022858 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g3042 4 41947069 41949132 Prci9g1536 9 28172800 28176160 ECH
Prci9g1536 9 28172800 28176160 Prci9g1536 9 28172800 28176160 ECH