Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1422 ATGCAGGAAATACATTCCATCGGAGGCGGTGGATTTTTCGACGGCGGTGGCGGTGGAGCTGGCGGAGGAGACAGGAGAGTGAGGCCGCACCACCACCAGAACCAGCAGGCCTTGAAGTGCCCGCGGTGCGACTCCCTCAACACCAAGTTCTGCTACTACAACAATTACAACCTCTCCCAACCCCGCCATTTCTGCAAGAACTGCCGTCGATACTGGACCAAAGGTGGCGTCCTCCGCAATGTCCCCGTCGGGGGAGGATGCCGTAAATCCAAGCGCTCCAAGCCCAAAACCAGTTCCTCTTCAGAACGTCCTCCCACGCCGATTCGACCCCCGGCGCCGCCCCCGCCACAAGAGCACCACAAGTCCACCTCTCACTCCAGCAGCGAAAGTTCCAGCCTTACCGCCGCCGCCACGGAAGCGTTATCGGCGCCCTCCTCGTTGAACCGCGAGCTGCTCCCCAGTCAGACTTCAAACCCCAATTTGGACTCGGGATTGATGGAGCAAAGCGGGGATTGCGGTATTTTCTCGGAGATAGGGAGCTTGACGAGCCTGATCAACACAACGAGCGAAGCATTGTCGTTCGGCTTCGGGAATATTCCGGAGGCGACGTCGTTCCGGTTCAGCAGTACTGCTCAGCCAGAAGGGATGGCCGGGAACGAGTTATTGTCGGGGGAGTGGCAAGCACAGCAAAAAGAGACGGCGATGAGCGACTTGATTTCACAGCAGGAGCTGAAGTTGCCGGAGATCACACCGGGGTCACTGCTTGATCCGACGGCTCCGGTTGATTTGTCGGCGTTGCAGAGCAAAAACGAGAACGGAGGTTTCGGGTCGCTGGATTGGCAGGGATGCTCGGACCAAGGTCTGTACGACCTGCCTAACACCGTAGATCACGCTTACTGGAGTCACACTCACTGGACGGATCAAGAAAATCCCAGTCTCTTCCATCTTCCGTGA 954 0.5786 MQEIHSIGGGGFFDGGGGGAGGGDRRVRPHHHQNQQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSKPKTSSSSERPPTPIRPPAPPPPQEHHKSTSHSSSESSSLTAAATEALSAPSSLNRELLPSQTSNPNLDSGLMEQSGDCGIFSEIGSLTSLINTTSEALSFGFGNIPEATSFRFSSTAQPEGMAGNELLSGEWQAQQKETAMSDLISQQELKLPEITPGSLLDPTAPVDLSALQSKNENGGFGSLDWQGCSDQGLYDLPNTVDHAYWSHTHWTDQENPSLFHLP 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1422 317 MobiDBLite consensus disorder prediction 1 37 - -
Prci9g1422 317 ProSiteProfiles Zinc finger Dof-type profile. 38 92 IPR003851 GO:0003677|GO:0006355
Prci9g1422 317 ProSitePatterns Zinc finger Dof-type signature. 40 76 IPR003851 GO:0003677|GO:0006355
Prci9g1422 317 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 30 208 IPR045174 GO:0003700|GO:0006355
Prci9g1422 317 MobiDBLite consensus disorder prediction 126 165 - -
Prci9g1422 317 MobiDBLite consensus disorder prediction 82 165 - -
Prci9g1422 317 MobiDBLite consensus disorder prediction 104 118 - -
Prci9g1422 317 Pfam Dof domain, zinc finger 36 92 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1422 Prci-Chr9 27501985 27503537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1422 24 314 C2C2-Dof Transcription Factor Family AT5G60850 40.125 1.51e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Prci9g1422 zf-Dof 3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1422 - - qsa:O6P43_002258 316.235