Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0260 ATGAGCGATATGGCTCTCCTGCTGGACAATTGCGATGGCATATTACTCTCCCTGGACTCTCACAAGTCCGTGCCCGCTCCCTTCCTTACCAAGACCTACCAGCTCGTCGACGATCCCTCCACCGATCACATCGTCTCCTGGGGCGAGGACGACACCACTTTCGTCGTTTGGCGTCCCCCTGAGTTCGCTCGCGATCTCCTCCCCAACTACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAGCTCAACACCTATGGTTTCAGAAAGATCGTGCCGGACAGGTGGGAGTTCGCCAATGAGTTCTTTAAGAAGGGAGAGAAGCACTTGCTGTGCGAGATCCACCGGAGGAAAACAGCTCAGCCTCATCATCATCAGAACCATCACGGCGTCGGCGTCGGCGTCGGCGTCGGGGTGCCCGCTTTCTTTCCCTTCCCTTCCAGGCTCAGCGTCTCTCCTCCCGGCGACTCCGACGGTGAACAGAACAATTGGTGTGATTCACCGCCGCTTGCTTCTCCTGCTCCTGTTTCTTCCCTCATAAACGGCGCCAACTACAGCTCCTCCTTCACCACTCTCTCCGAGGACAATGAAAGGCTCAGGCGAAGCAACACCATGCTCATGACCGAGCTCGCACATATGAAAAAGCTTTATAACGACATCATCTACTTCGTTCAGAACCATGTCAAGCCAGTCCCTCCTAGCAGCTCCTATCCTAGCTCTTTGCTGTCCCCGCCTTCTCCTATGACTATTACTACTGCTAATGGTTCCGTGGTGCAAAGGCCCCTGAACCAGCTTTTGGGTTATTATTCCATGAACAATAAGCAAGCTCCGCCTCTCGTGAACTCACCTACCAACACATCCAAGAGCACCATAACCATAGTTGAAGAGCCAAGTAGTAACAGCTGCAAGACCAAGCTCTTTGGTGTGTCGCTTCAATCTAAGAAAAGGGTGCACCCCGAGTACGGTTTTAATCCCGCCAATTCATCGGACACGGGCAAGGCTCGTTTCGTCATGGAAAGGGATGACTTGGGCTTGAATCTCATGCCTCCCTCGACTTGTTAG 1062 0.532 MSDMALLLDNCDGILLSLDSHKSVPAPFLTKTYQLVDDPSTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPHHHQNHHGVGVGVGVGVPAFFPFPSRLSVSPPGDSDGEQNNWCDSPPLASPAPVSSLINGANYSSSFTTLSEDNERLRRSNTMLMTELAHMKKLYNDIIYFVQNHVKPVPPSSSYPSSLLSPPSPMTITTANGSVVQRPLNQLLGYYSMNNKQAPPLVNSPTNTSKSTITIVEEPSSNSCKTKLFGVSLQSKKRVHPEYGFNPANSSDTGKARFVMERDDLGLNLMPPSTC 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0260 353 ProSitePatterns HSF-type DNA-binding domain signature. 67 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci8g0260 353 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci8g0260 353 PRINTS Heat shock factor (HSF) domain signature 79 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci8g0260 353 PRINTS Heat shock factor (HSF) domain signature 28 51 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci8g0260 353 Gene3D - 20 119 IPR036388 -
Prci8g0260 353 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 21 270 IPR027725 -
Prci8g0260 353 SUPERFAMILY "Winged helix" DNA-binding domain 25 117 IPR036390 -
Prci8g0260 353 SMART hsfneu3 24 117 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci8g0260 353 FunFam Heat stress transcription factor B-4 20 118 - -
Prci8g0260 353 Pfam HSF-type DNA-binding 28 117 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0260 Prci-Chr8 1662234 1663826 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0260 4 352 HSF AT1G46264 55.053 2.10e-119 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Prci8g0260 HSF_DNA-bind 2.4e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1372 2 10388694 10390354 Prci8g0260 8 1662234 1663826 CCT
Prci8g0260 8 1662234 1663826 Prci8g0260 8 1662234 1663826 ECH