Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0255 ATGCAAGGGACAAGGGGTAGAATAGGTTCCTTGGCTGAAACCTTGGAATTTGATTGTGGATCTACTTCAAGTAATGCTACCGTGGATCAGCAGATTTGCTGGGATGGCACGAGGAACCCTTTAGAAAATCAAAGCCCTCAAATTATGCTTTCACCTGGTGATGTGAACCCATTGTATGCAAATTCAATTAACCATGAATGGAAGAGCGTCAATAATTGGAGAATTGGTGAGCCAGGTTCCAGTGATTCACATATTGAAATTAACAATGACGAGCAGAAAAGAGAACTTGGATGGTCATCTTCAACGAGTGCTGGTGCTGGATCAAGATTAGGGTGGCAGTTTGAATCAACCAATTTACCTTCATTGGACAATGTCAATACAAGTCCTACGTGTATGAACAACTCCAATCCTCATTCTGTATCACAGAATCTCAACCTAAATGCCAGTTTGGCAGATGCCGGCTTTAATATGGGGCAGCATCTTGAGCATCCTAGCTTGAACAAACCAAGTGGATCAGTAAATGAGCCTATCCCACCTACTGTTGGTCCTGCGCCCTTTGCTCATCCTTCTGGAAGTAACATGGTAGATAATAGTAGTGGTAGGCTGGGGTATTCTACTGATGCCCAGCGTGTATCCTGTAAAAGAAAGGCTGTTGAAGGATATGTTGGACAATCTTCAGAAGGTGAAAGTTCTAGCCGCAGCCAGTACACAGAAAACTGTGCTTGGCATACACTTCCTACTCAGAGTAATTCTTGGAGCAGTTTAAGCAGATCTGCTACATCAGCATTGATAAGTTCAAGACCTGGCCGGGATGTGGGTGATGAATCTTCAGAGAGCATTGATAATTTGAATGTTGCAAGAAGCTCAAATAGCTTCCTGAGGAATTCTCGCTTGAGGATAAATCCTTCAAATCAACAGGATTCCATTCCTTTTGTTGCATTCTCCAATGACAGTGTGACTAGACGTTCTACAATTCCTTCATGTTCTCCTATGACACAAAGTTTTTGTCCTGTTGATGGCTCTATGGATTTGAGGTCAGCGCCATCTGCAGATATCGTTCCACAAAGCCAGCCCTTTGGAACCAGTTCTCCTTTACGCAGGAATATGCCATCATTTAGATGGAGTGGAAGCTCTAACTCAAGAAACAGCCATTTGTCAAACTCAATGATTTGGCCAGACAGGGATACTCAACTATACGAAGAAGGAAGCTCAAGAAGCATGTCTAGAAGCATAAATGATCCAATGTTTGTTCCAGTGGCTGATTTAAGAAATTCGGTTCGGAGTCCAACCAATAGAGCTTTAAGTAGTGCAAATTTAAATATATCAGGAAATGTTACTTCCTCACCGCATACTGGATTGAGTTCAGCCTTCAATTTACCATCTATTCCATCCTGGGTTTCTCGTCCCAATCCTCTACATCATCCACGGAGGTTATCTGATTATGTTCATCGATCATTGTTGTCATCTGTTTCTGAGGCTGCTGGAGGTTTCAGCAATAGCAATTCTTTCTTGCGCTCTGCTCCTATCACTTTATCTGAAGCAAGGGCACCATCATCTCGAGCTGGAAGTCAAGGACGTCATCAATCGCACTCAATATCACCATGGGTGGAGAGGCGAGGTGATAGCAACTTCAGGCTTCCCTATTCATTGCAAACTCTGGCTGTTGCCAGTGAAGGAAGTGGTAGACTTGGATCTGAGGATTTTATGATCTTTGACCATTCAGTATTTTCTGGAATGGCTGATATTCATGACCGACATAGGGACATGCGACTTGATGTTGATAACATGTCTTACGAGGAGTTATTGGCCCTGGAAGAACGGATTGGAAATGTGAGTACTGGATTGAGCGAGGAAACTGTATTGAAACTAATGAAACGGAGGAAGTATTCAGTTGAAGAAGGGTCTCAATGCGAGGCAGAACCCTGCTGTATTTGTCAGGAAGAGTTTGACAACGGGGATGATGTTGGAACGCTTGATTGTGGCCATGACTACCATACGAACTGCATCAAACAGTGGCTAATGCAGAAGAATCTGTGCCCCATTTGTAAGACAACAGGCTTGGCAACTTGA 2070 0.4338 MQGTRGRIGSLAETLEFDCGSTSSNATVDQQICWDGTRNPLENQSPQIMLSPGDVNPLYANSINHEWKSVNNWRIGEPGSSDSHIEINNDEQKRELGWSSSTSAGAGSRLGWQFESTNLPSLDNVNTSPTCMNNSNPHSVSQNLNLNASLADAGFNMGQHLEHPSLNKPSGSVNEPIPPTVGPAPFAHPSGSNMVDNSSGRLGYSTDAQRVSCKRKAVEGYVGQSSEGESSSRSQYTENCAWHTLPTQSNSWSSLSRSATSALISSRPGRDVGDESSESIDNLNVARSSNSFLRNSRLRINPSNQQDSIPFVAFSNDSVTRRSTIPSCSPMTQSFCPVDGSMDLRSAPSADIVPQSQPFGTSSPLRRNMPSFRWSGSSNSRNSHLSNSMIWPDRDTQLYEEGSSRSMSRSINDPMFVPVADLRNSVRSPTNRALSSANLNISGNVTSSPHTGLSSAFNLPSIPSWVSRPNPLHHPRRLSDYVHRSLLSSVSEAAGGFSNSNSFLRSAPITLSEARAPSSRAGSQGRHQSHSISPWVERRGDSNFRLPYSLQTLAVASEGSGRLGSEDFMIFDHSVFSGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETVLKLMKRRKYSVEEGSQCEAEPCCICQEEFDNGDDVGTLDCGHDYHTNCIKQWLMQKNLCPICKTTGLAT 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0255 689 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 165 687 IPR045191 GO:0061630
Prci8g0255 689 ProSiteProfiles Zinc finger RING-type profile. 642 683 IPR001841 -
Prci8g0255 689 MobiDBLite consensus disorder prediction 514 534 - -
Prci8g0255 689 FunFam E3 ubiquitin-protein ligase MBR2 610 687 - -
Prci8g0255 689 Pfam Ring finger domain 642 683 IPR001841 -
Prci8g0255 689 SUPERFAMILY RING/U-box 627 685 - -
Prci8g0255 689 SMART ring_2 642 682 IPR001841 -
Prci8g0255 689 MobiDBLite consensus disorder prediction 158 207 - -
Prci8g0255 689 MobiDBLite consensus disorder prediction 514 531 - -
Prci8g0255 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 605 686 IPR013083 -
Prci8g0255 689 MobiDBLite consensus disorder prediction 191 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0255 Prci-Chr8 1610590 1616358 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0255 1 689 C3H Transcription Factor Family AT2G15530 31.932 8.55e-71 242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1365 2 10329369 10335426 Prci8g0255 8 1610590 1616358 CCT
Prci8g0255 8 1610590 1616358 Prci8g0255 8 1610590 1616358 ECH