Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0216 ATGGGAACGGAGAATCCGCCTAATTACACCTTTATGGGACGCTCTCTCAGCGAATTGAGTATCAACGACAATTCTTCCTCTGCTTTCAGCGACTGTAACAGCGATAGATCTGGTGAATTCCCCACTGCTTCTTCCCAGAGCCGCCGTCTTCTTATTGCCTGCGCTTCTGAGAATTCCGATGATTTTATTCGCCAGCTTGTCTCCGACCTCCATTCCACTTCTATTGACGAGCAGAAGCAGGCCGCCCTGGAGATCAGATTACTCGCCAAGAATAAATCAGAAAATCGCCTCAAAATCGCCGAAGCCGGCGCAATTAAGCCCTTAATCTCGCTTATATCTTCCCCTGACCTTCAGCTCCAAGAGTACGGCGTCACGGCGATTCTGAATCTTTCCTTGTGCGACGAGAACAAAGACCTGATAGCTTCATCGGGAGCGATCAAGCCACTGGTTCGAGCTCTCAAGACGGGAACATCAACGGCTAGAGAGAACGCGGCTTGCGCTTTACTTCGTCTGTCGCAAATAGAGGAGAATAAGATCGTGATTGGAAGGTCAGGGGCCATTCGACCGCTAGTGAATCTTCTGGAGAACGGGGGGTTCAGAGGTAAGAAAGACGCATCGACGGCGCTGTATTCGCTGTGTTCGGTGAAGGAGAACAAGATAAGAGCAGTACAGGCAGGAATCATGAGAGCGCTGGTTGAATTGATGGCCGATTTCGGATCAAACATGGTAGACAAGTCAGCGTACGTGTTGAGCGTATTGGTATCTGTGCCAGAGGCGAGGACGGCATTAGTGGAGGAAGGGGGGATTCCGGTGCTGGTGGAGATAATAGAGGTTGGTTCGCAGAGACAGAAAGAAACCGCAGTGGTGATATTGTTGCAGATTTGCGAGGACAGCGTGGCTTATCGTACAATGGTTGCTCGAGAAGGGGCCATTCCTCCCTTGGTTGCATTGTCCCAGTCCGGCACCAATCGGGCCAAACAGAAGGCGGAGACACTTATAGAACTTCTACGGCAACCGAGATCCGGCAACGTCGCTGCCCGCACCTCAGAAGTGTCGGCATAA 1062 0.5141 MGTENPPNYTFMGRSLSELSINDNSSSAFSDCNSDRSGEFPTASSQSRRLLIACASENSDDFIRQLVSDLHSTSIDEQKQAALEIRLLAKNKSENRLKIAEAGAIKPLISLISSPDLQLQEYGVTAILNLSLCDENKDLIASSGAIKPLVRALKTGTSTARENAACALLRLSQIEENKIVIGRSGAIRPLVNLLENGGFRGKKDASTALYSLCSVKENKIRAVQAGIMRALVELMADFGSNMVDKSAYVLSVLVSVPEARTALVEEGGIPVLVEIIEVGSQRQKETAVVILLQICEDSVAYRTMVAREGAIPPLVALSQSGTNRAKQKAETLIELLRQPRSGNVAARTSEVSA 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0216 353 PANTHER U BOX DOMAIN-CONTAINING 62 337 - -
Prci8g0216 353 SUPERFAMILY ARM repeat 59 336 IPR016024 -
Prci8g0216 353 FunFam ARM repeat superfamily protein 55 200 - -
Prci8g0216 353 Pfam Armadillo/beta-catenin-like repeat 93 131 IPR000225 GO:0005515
Prci8g0216 353 Pfam Armadillo/beta-catenin-like repeat 176 214 IPR000225 GO:0005515
Prci8g0216 353 Pfam Armadillo/beta-catenin-like repeat 134 172 IPR000225 GO:0005515
Prci8g0216 353 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 103 145 IPR000225 GO:0005515
Prci8g0216 353 Gene3D - 55 251 IPR011989 -
Prci8g0216 353 Gene3D - 252 337 IPR011989 -
Prci8g0216 353 SMART arm_5 92 132 IPR000225 GO:0005515
Prci8g0216 353 SMART arm_5 215 255 IPR000225 GO:0005515
Prci8g0216 353 SMART arm_5 133 173 IPR000225 GO:0005515
Prci8g0216 353 SMART arm_5 174 214 IPR000225 GO:0005515
Prci8g0216 353 SMART arm_5 298 338 IPR000225 GO:0005515
Prci8g0216 353 SMART arm_5 256 296 IPR000225 GO:0005515
Prci8g0216 353 FunFam Arm repeat containing protein homolog-like 255 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0216 Prci-Chr8 1312713 1314762 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0216 27 345 U-box Gene Family AT2G23140 48.936 1.17e-91 285
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1312 2 9868157 9869947 Prci8g0216 8 1312713 1314762 CCT