Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g1800 ATGTCGCATCCTGGGAAGCCCGATTCGGAGCTAGGGTTAGGTGCTCTCAGCGATCGATTTCGCGATTCCCTGAGCTGCGAGGCGAACAAGCCGGATTTTCGCGAACTCGATCTAGGGTCGCCAGTTTCGCCATTGCGGACTCGTCAAAGTGGACGTGGTGCGAGTGGACTCACCACTACTACCAGCAGTAGTTCCAGTTCATCTGGATCGGTTTCTGGGCGCAATGGGTATAACCCGGTCTCGAAAGGATCCGACTCTGGTGCGAACAACCACTCCGGTGAGCTTTCTGGTTCCAGCGAGAGCAGTCCCACTGCCGCCGAGAGCCTTCGATCCGGGGGGAATGCCAGGAACTTCAAACCGGGTCACGCAAGATCCGATGCCGGAACCACCCCGCCTTTTATATATTCGGGTCAGAGCTCATCCGTCACATCACCAGCATTGAATGTTCTTCCTACCGGCAATATCTGTCCGTCTGGCAAGATTCTGAAGACGGGTATGGCGTCCAATCGGACCTCCAGGACGGACGTTTTGGGCTCCGGTACGGCCAATTATGGTCACGGAAGCATAATGCGGGGCTGTGGATCATCCAAACATACTGCCGGAGAGGCGGCAAGTTCGGCCAATGTAAGGGCAACCGGTGCTGGCGGTTTCAAGGAACCGTTCAAGAAAGCGGCGGCGAGTTTGGATCCAGAAGAGGTGAAGAGAGCGGGGAACGAGCACTACAAGAGGGGTAACTTTACAGAGGCACTGAATCTTTATGATCGGGCAATTGGACTGTCCCCTGGTAATGCCGCCTACCGGAGCAACCGTGCGGCTGCATTGACGGCATTGGGTCGGTTGACTGAGGCGGTGAGGGAATGCGAGGAGGCTGTGAGATTGGATTCTAATTATGGAAGAGCACACCAGCGTCTTGCTTCTCTTTTTCTCCGGTTAGGACAAGTTGAGAATGCGAGGAACCACCTATTTGGTCGTGGGCTGCAGCTGGATCCTTCTGAGCTGCAGAAGCTACAATCGGTGGAGAAGAATATCAACAAATGTACTGATTTTCGAAGGAGAGGTGATTGGAAAAGTGTCCTCAGGGAAGTTGATGCTGCTGTTGCTGCTGGAGCAGACTCTTCCCCTCAGCTCTTTATGTGTAGAGCAGAAGCCCTTTTAAAGCTTCACCAAATTGATGATGCTGAATCAATTCTGTCAGCTATTCCAAAAACAGAATCACATTCTAAATCCTCGTCTCAGGCAAGGTTTTTTGGAATGCTTTCTGAAGCTTATTCTTTCTTTGTTAGAGCTCAGATTGAGATGGCTTTGGGAAGGTTTGAGAATGCAGTTGCAGCTGCTGAGAAAGCTGGTCTCATTGATGCCCGAAACATCGAAGTTGCTGTTTTGCTCAGCAATGTAAGGATGGTGGCTAGAGCTCGAGCTCGTGGCAATGATCTTTTTAAATCTGAAAGGTTCACTGAAGCTTGCTCTGCATATGAGGAAGGTTTGAGGCTGGAGCCTTCAAATGCTGTTCTCCATTGCAATAGAGCTGCTTGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAGGACTGCAATCAAGCTTTACACATCCAACCAAATTATACAAAAGCACTTCTTCGAAGGGCTGCCTCAAATAGCAAGCTAGAGAGGTGGGAAGAAGCAGTCCAAGACTATGAGGTCTTACGAAGAGAACTTCCAGATGACAATGAAGTTGCTGAAGCTCATTTCCATGCACAAGTTGCATTGAAGAAATCTCGTGGGGAAGAAGTTTATAATTTGAAATTTGGTGGCGAAGTGGAAGGAGTATCTGGTCTCGAGCAGTTCAGAGCTGCAATATCTTTACCAGGTGTATCTGTTGTCCATTTTGAAATTGAATCTGACTCACAATGCAAACAGTTATCACCATTTGTGAATACACTTTGCAGTCGATTTCCTTCTGTTAACTTTCTCAAGGTGGATGTTCAAAAAACCCCAGCAATTGCAACCGCTGAGAATGTTAGGTTGGTACCCACTTTCAAGATCTACAAAAATGGCAGCCGTGTGAAGGAACTTGTTTGCCCCAGCCGTGATATGTTGGAACACTCTGTGAGGCATTACAGCACATAG 2109 0.4889 MSHPGKPDSELGLGALSDRFRDSLSCEANKPDFRELDLGSPVSPLRTRQSGRGASGLTTTTSSSSSSSGSVSGRNGYNPVSKGSDSGANNHSGELSGSSESSPTAAESLRSGGNARNFKPGHARSDAGTTPPFIYSGQSSSVTSPALNVLPTGNICPSGKILKTGMASNRTSRTDVLGSGTANYGHGSIMRGCGSSKHTAGEAASSANVRATGAGGFKEPFKKAAASLDPEEVKRAGNEHYKRGNFTEALNLYDRAIGLSPGNAAYRSNRAAALTALGRLTEAVRECEEAVRLDSNYGRAHQRLASLFLRLGQVENARNHLFGRGLQLDPSELQKLQSVEKNINKCTDFRRRGDWKSVLREVDAAVAAGADSSPQLFMCRAEALLKLHQIDDAESILSAIPKTESHSKSSSQARFFGMLSEAYSFFVRAQIEMALGRFENAVAAAEKAGLIDARNIEVAVLLSNVRMVARARARGNDLFKSERFTEACSAYEEGLRLEPSNAVLHCNRAACWFKLGQWERSIEDCNQALHIQPNYTKALLRRAASNSKLERWEEAVQDYEVLRRELPDDNEVAEAHFHAQVALKKSRGEEVYNLKFGGEVEGVSGLEQFRAAISLPGVSVVHFEIESDSQCKQLSPFVNTLCSRFPSVNFLKVDVQKTPAIATAENVRLVPTFKIYKNGSRVKELVCPSRDMLEHSVRHYST 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g1800 702 SUPERFAMILY TPR-like 230 456 IPR011990 GO:0005515
Prci7g1800 702 MobiDBLite consensus disorder prediction 131 148 - -
Prci7g1800 702 Pfam Tetratricopeptide repeat 502 535 IPR001440 GO:0005515
Prci7g1800 702 Gene3D Tetratricopeptide repeat domain 229 588 IPR011990 GO:0005515
Prci7g1800 702 SUPERFAMILY Thioredoxin-like 506 699 IPR036249 -
Prci7g1800 702 Pfam Tetratricopeptide repeat 236 296 - -
Prci7g1800 702 CDD TRX_family 607 694 - -
Prci7g1800 702 Pfam Thioredoxin 608 692 IPR013766 -
Prci7g1800 702 MobiDBLite consensus disorder prediction 28 148 - -
Prci7g1800 702 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 21 699 IPR044534 -
Prci7g1800 702 MobiDBLite consensus disorder prediction 43 111 - -
Prci7g1800 702 FunFam TPR repeat-containing thioredoxin TTL4 594 701 - -
Prci7g1800 702 Gene3D Glutaredoxin 597 701 - -
Prci7g1800 702 ProSiteProfiles TPR repeat profile. 230 263 IPR019734 GO:0005515
Prci7g1800 702 SMART tpr_5 502 535 IPR019734 GO:0005515
Prci7g1800 702 SMART tpr_5 536 569 IPR019734 GO:0005515
Prci7g1800 702 SMART tpr_5 264 297 IPR019734 GO:0005515
Prci7g1800 702 SMART tpr_5 230 263 IPR019734 GO:0005515
Prci7g1800 702 SMART tpr_5 298 332 IPR019734 GO:0005515
Prci7g1800 702 SMART tpr_5 468 501 IPR019734 GO:0005515
Prci7g1800 702 SMART tpr_5 422 455 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g1800 Prci-Chr7 32988630 32992975 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g1800 467 612 U-box Gene Family AT3G07370 28.962 3.26e-09 57.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci7g1800 7 32988630 32992975 Prci6g1320 6 9617951 9622318 CCT
Prci7g1800 7 32988630 32992975 Prci7g1800 7 32988630 32992975 ECH