Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g1572 ATGGCCACTCTGCTGAATACGGCGTCTCCACCTGCAAACCTATCATCAAAAACAAAAGGTAACTGTGGTTTTGGCTTATATTCCCAGATCCTAAATATTCGTAGGATTTCCCTCCACAGGGATTTTCCCAGAGTTTTGGCTTCCATCCACACGGCTACTTCTTCAAATGATGCTGTTTTTACTCTGCCCAACTGGAGGGCAGGGAAGAGTGATCCAAAAAGTAAGGAGCTCAGGCTTAATGATGCATTTCTGTATGTAGAGTATATGGTGGGTAAAGGCCACAAGCCTGATGTAGCTCAAGCAACCCAGCTATTGTATGATCTTTGCAAGGCTAATAAGCTGAGGAAAGCTGTTAGAGTGATGGAGATGATGATAGGTTCAGGTATTATACCTTATGCAGCTTCCTGTACATATTTGGTCAATCATTTGTGCAAGAAAGGGAATGTTGGGCATGCAATGCAATTGGTTGAGAAAATGGAGGAACACGGGTTTCTAGTTAATACCATTACCTATAATACTCTAGTTAAAGGGCTTTGCATGCAGGGAAATTTAAACAAGAGCTTGCAGCTTATAGATAGATTAACGAAAAAAGGATTGGTCCCAAACGCATTCACATATTCTTTCTTGCTTGAAGCTACTTATAAGGAAAGGGGAGTAGACGAAGCCATGAAACTCTTAGATGAGATAATTGTCAAAGGTGGGGAGAGTAATTTGATTAGTTACAATGTTATATTAACTGGGTTGTGCAAGGAAGGTAGAACTGAAGAAGCCTTTAAACTGTTCAGGGAATTGCCTGCAAAGGGGTTTCACCCTAGTGTTGTGAGTTATAACATTTTGCTGAGGAATTTGTGTTATGAAGGGCGGTGGGAGGAGGCAAATGAGCTATTAGCAGAGATGTATGAAGAGGATCAGTCCCCCTCTGTGGTTACCTACAACATATTGATTACTTCTCTTGCCCTCCATGGAAGAATAGAACATGCTTTCAAGGTGTTGGCTGAAATGACAAAGAGTGGATTTAAGGCAACTGCAACTAGCTATAATCCAATTATTGCTTGTCTCTGCAAGGAAGGGAAGGTTGATCTTGTAGTTCAGTGTCTGGACCAAATGATTTTCCGGTACTGTAGTCCTAATGAAGGAACGTACAATGCTATTGCTATGCTTTGTGAGGGAGGGAAAGTGCAGGAAGCATTCTCCATAATTCAAAGTTTGGGTAATAAACAAAACTCCCCTATGCATGATTTCTATAAAAATGTGATTTGGAGCATGTGTAAGAAAGGGAACACGTATCCAGCCTTTCAAATATTATATGAAATGACAAAGTATGGATTTACTCCAGATTCTCATACTTATTCATCTTTGGTAAGAGGAATGTGTAGGGAAGGCATGTTTGATGGAGCTATTGAGATATACAGGATTTTGGAAGAAAATGGGTACAAGCCTGACACTGATAATTATAATGCGCTCTTACTTGGCCTTTGTAAATCTCATAGAACAGACTTGTCAATGGATATATTTCAGACAATGATTGATAAAGGATGTATGCCTAATGAAACAACTTATACCATTCTCATTGAAGGGCTTGTTTTGGAAGAAGAAAAGGATATGGCAGCCAATCTTTTGAAAGAGTTGCATCAAAAGGAGGTCCTGAGCCAGTGTACTGTAGAGAGACTTATTATGCAGTATGACCTCCAGGATTTAGCAGATTAG 1707 0.4001 MATLLNTASPPANLSSKTKGNCGFGLYSQILNIRRISLHRDFPRVLASIHTATSSNDAVFTLPNWRAGKSDPKSKELRLNDAFLYVEYMVGKGHKPDVAQATQLLYDLCKANKLRKAVRVMEMMIGSGIIPYAASCTYLVNHLCKKGNVGHAMQLVEKMEEHGFLVNTITYNTLVKGLCMQGNLNKSLQLIDRLTKKGLVPNAFTYSFLLEATYKERGVDEAMKLLDEIIVKGGESNLISYNVILTGLCKEGRTEEAFKLFRELPAKGFHPSVVSYNILLRNLCYEGRWEEANELLAEMYEEDQSPSVVTYNILITSLALHGRIEHAFKVLAEMTKSGFKATATSYNPIIACLCKEGKVDLVVQCLDQMIFRYCSPNEGTYNAIAMLCEGGKVQEAFSIIQSLGNKQNSPMHDFYKNVIWSMCKKGNTYPAFQILYEMTKYGFTPDSHTYSSLVRGMCREGMFDGAIEIYRILEENGYKPDTDNYNALLLGLCKSHRTDLSMDIFQTMIDKGCMPNETTYTILIEGLVLEEEKDMAANLLKELHQKEVLSQCTVERLIMQYDLQDLAD 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g1572 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Prci7g1572 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Prci7g1572 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 132 166 IPR002885 -
Prci7g1572 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 481 515 IPR002885 -
Prci7g1572 568 NCBIfam pentatricopeptide repeat 309 342 IPR002885 -
Prci7g1572 568 NCBIfam pentatricopeptide repeat 239 272 IPR002885 -
Prci7g1572 568 NCBIfam pentatricopeptide repeat 135 167 IPR002885 -
Prci7g1572 568 NCBIfam pentatricopeptide repeat 274 307 IPR002885 -
Prci7g1572 568 NCBIfam pentatricopeptide repeat 485 517 IPR002885 -
Prci7g1572 568 NCBIfam pentatricopeptide repeat 169 203 IPR002885 -
Prci7g1572 568 NCBIfam pentatricopeptide repeat 345 378 IPR002885 -
Prci7g1572 568 NCBIfam pentatricopeptide repeat 448 482 IPR002885 -
Prci7g1572 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Prci7g1572 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 446 480 IPR002885 -
Prci7g1572 568 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 74 360 - -
Prci7g1572 568 SUPERFAMILY HCP-like 83 276 - -
Prci7g1572 568 Coils Coil 529 549 - -
Prci7g1572 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
Prci7g1572 568 Gene3D Tetratricopeptide repeat domain 69 160 IPR011990 GO:0005515
Prci7g1572 568 Gene3D Tetratricopeptide repeat domain 232 298 IPR011990 GO:0005515
Prci7g1572 568 Gene3D Tetratricopeptide repeat domain 161 231 IPR011990 GO:0005515
Prci7g1572 568 Gene3D Tetratricopeptide repeat domain 299 428 IPR011990 GO:0005515
Prci7g1572 568 Pfam PPR repeat family 306 347 IPR002885 -
Prci7g1572 568 Pfam PPR repeat family 167 212 IPR002885 -
Prci7g1572 568 Pfam PPR repeat family 415 459 IPR002885 -
Prci7g1572 568 Pfam PPR repeat family 237 284 IPR002885 -
Prci7g1572 568 Pfam PPR repeat family 480 527 IPR002885 -
Prci7g1572 568 Pfam PPR repeat 135 164 IPR002885 -
Prci7g1572 568 Pfam PPR repeat 108 129 IPR002885 -
Prci7g1572 568 Gene3D Tetratricopeptide repeat domain 431 561 IPR011990 GO:0005515
Prci7g1572 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Prci7g1572 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Prci7g1572 568 Coils Coil 566 568 - -
Prci7g1572 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g1572 Prci-Chr7 31557128 31559678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g1572 19 565 Glycosyltransferase AT1G05670 24.685 6.35e-46 171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci7g1572 7 31557128 31559678 Prci7g1572 7 31557128 31559678 ECH