Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1897 ATGATGCAGAAATTAAAGACCCCACCCAAACGAAGAGCCTCCTCATATCCGTTTGCTTCTTCACCTTCTGCTCTTGTGTCGATGATGGCTTCCCTCTTTCCCTGTCCCACTCTCTCTTCTAAAATTGACTTCGTGGTTTCTCCACTATCAGAAGCACGGACTCCTTATCCTAAATTCAATGGTAGCACTTCTTTGGCCGCTAAAAATTTCGGCACCTGCAAACTCTGTGCTGTCAGAAATTCGCATTCTCCAAGCTTTGTTCCAATGGCTTCGGCCAGCAGAGAGCCCATGGTTCCCCCTTACCGCGTTTTGATAACAGGTTCAAGCAAAGGAATTGGTTACGCATTGGCAAAAGAATTTCTAAGAGCTGGTGACTATGTCGTAATTTGCTCAAGATCAAATGAAAGGGTAGAATCTGCTGTCCAGAGCTTAAGAGAAGAATTTGGGGAGCAGCATGTGTGGGGCACTAAGTGTGATGTGAGAGAGGCAGAGGATGTGAAGAATTTAGTTGCATTTGCCCAAGAAAAACTGAAATACATTGATATATGGATCAATAATGCAGGATCAAATGCATATAGCTACAAGCCTCTTGCGGAGGCATCTGATGAAGATCTTATTGAGGTAGTTACTACAAATACGCTTGGTTTGATGATATGTTGTCGAGAGGCAATAAAGATTATGGCAAATCAGCCACGCGGAGGTCATATTTTCAATATTGATGGGGCAGGTTCAGATGGAAGACCACTCCCAGGTGTTTTGAGTTTGCTCAAGTTTGCTGCATATGGAGCTACAAAGCGGAGCGTGGTGCATTTAACAAAATCATTACAGGCAGAATTACAAATGCAGGACGTGAAAAATGTTGCGGTGCATAATCTTTCGCCAGGGATGGTCACTACTGATCTTCTCATGTCTGGTGCTACAACTAAACAGGTAAAGAAAACTCATGTTACTTTCCCTAGGTCATCTCAAGAGTTTTTTCTGTGTATTTTGGACTCAATTTTTGCTCTCCTAGAATTCTTGTTCTGTATTTATTATTTTATTCCTGTGTTACATGATGATATGCAGGTTGCAGAATTCCTGGTTCCAAACATTAGATCCACCATTGCCAATGGATCAATGAAGCCATCTTACATTAGATTTCTCACTGGGGTTAAAGCATATTCTCAGATATTTTCACGAATTGCATTTGGTGCAAGAAGGAACCGATACCTCCTTGAAGATTGA 1224 0.4191 MMQKLKTPPKRRASSYPFASSPSALVSMMASLFPCPTLSSKIDFVVSPLSEARTPYPKFNGSTSLAAKNFGTCKLCAVRNSHSPSFVPMASASREPMVPPYRVLITGSSKGIGYALAKEFLRAGDYVVICSRSNERVESAVQSLREEFGEQHVWGTKCDVREAEDVKNLVAFAQEKLKYIDIWINNAGSNAYSYKPLAEASDEDLIEVVTTNTLGLMICCREAIKIMANQPRGGHIFNIDGAGSDGRPLPGVLSLLKFAAYGATKRSVVHLTKSLQAELQMQDVKNVAVHNLSPGMVTTDLLMSGATTKQVKKTHVTFPRSSQEFFLCILDSIFALLEFLFCIYYFIPVLHDDMQVAEFLVPNIRSTIANGSMKPSYIRFLTGVKAYSQIFSRIAFGARRNRYLLED 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1897 407 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 248 276 IPR020904 GO:0016491
Prci6g1897 407 CDD SDR_c 103 319 - -
Prci6g1897 407 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 101 341 IPR036291 -
Prci6g1897 407 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 261 280 IPR002347 -
Prci6g1897 407 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 234 242 IPR002347 -
Prci6g1897 407 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 178 189 IPR002347 -
Prci6g1897 407 PANTHER NON-SPECIFIC LIPID TRANSFER PROTEIN-RELATED 88 405 - -
Prci6g1897 407 Gene3D - 101 328 - -
Prci6g1897 407 PRINTS Glucose/ribitol dehydrogenase family signature 228 244 IPR002347 -
Prci6g1897 407 PRINTS Glucose/ribitol dehydrogenase family signature 261 280 IPR002347 -
Prci6g1897 407 PRINTS Glucose/ribitol dehydrogenase family signature 178 189 IPR002347 -
Prci6g1897 407 PRINTS Glucose/ribitol dehydrogenase family signature 102 119 IPR002347 -
Prci6g1897 407 PRINTS Glucose/ribitol dehydrogenase family signature 285 302 IPR002347 -
Prci6g1897 407 Pfam short chain dehydrogenase 103 304 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1897 Prci-Chr6 17361520 17374059 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1897 103 301 Acyl Lipid Metabolism Gene Families AT1G24360 30.500 9.16e-18 81.6