Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1404 ATGCGGTTGAGCTCTAAAGGAGGTGGAGAAATTTCTCAGAGAAGGAAACGAATCAACTTTTTTTATTTATTCAAATTTCTGTGGTTTTTTTTTTTTTTTTTTGTGGTGGGAAAGGAGAGAATCTCAATTAGGATTGTGGTCGAAAAAAAGATGAAGATTCAATGTAACGTGTGTGAGGCGGCGGAGGCGGAGGTTCTGTGCTGCGCGGATGAGGCGGCGCTATGTCGGCAATGCGACGAGAAGGTTCATGCAGCTAACAAGCTGGCTACCAAGCATCAGAGGGTTCCTCTATCTACCTCCTCCTCTCACATGCCCAAATGTGATATTTGTCAGGAAATGGTTGGCTATTTTTTCTGTCTGGAGGACCGAGCTCTACTATGCAGAAAATGTGATGTGGCAATACACACAGCAAATTCCTATGTCTCTGCTCATCAGAGGTTTCTGCTTACTGGTGTAAGAGTGGGCCTTGAAGCTACTGAGCCTGTTGCTCAATCATCCTCTGTGAAGTCAGATTCTGGGGGTAAAGTGTCAGATACAATATCCACTTCTGTCTCCAAGAAGGTTTCTCCAACGGCTCAGCCACCTGAATACAATGAATTGTTACCTACTCAAATTGGAGGAATTGAGGAGTTTCAGCCAGCCAAAGTGTGTTATGGCGGTGGTTCAACTGACTGGCCGCTTGATGAATTCTTTGGTTTTAATGAATTCAGTCACAATTTCAATTTTATGGATAGTGCCAATGGACCATCCAAGGCTGAGAGCAGTAAGCTTGGGGATTCTGATTCTTCTGTTTTGAGATCTAGTGAAGAGGAAATGGATAACGATGATCTCTTGGGGTGTGTCCCAGATTCGTCTTGGACAGTTCCTCAGATCCCTTCCCCTCCTACAGCGTCAGGCTTGTATTGGCCGAAAGATCCTCGGTATTCATCCGCTAACAATGCTATGTTTGTTCCTGACATATGCTTTCCTCACGTCCAACAACCTCTTTGTGCTCAGAGAAATAACACATTATCAAAGCGGCGGAGACAACAGTAA 1035 0.4454 MRLSSKGGGEISQRRKRINFFYLFKFLWFFFFFFVVGKERISIRIVVEKKMKIQCNVCEAAEAEVLCCADEAALCRQCDEKVHAANKLATKHQRVPLSTSSSHMPKCDICQEMVGYFFCLEDRALLCRKCDVAIHTANSYVSAHQRFLLTGVRVGLEATEPVAQSSSVKSDSGGKVSDTISTSVSKKVSPTAQPPEYNELLPTQIGGIEEFQPAKVCYGGGSTDWPLDEFFGFNEFSHNFNFMDSANGPSKAESSKLGDSDSSVLRSSEEEMDNDDLLGCVPDSSWTVPQIPSPPTASGLYWPKDPRYSSANNAMFVPDICFPHVQQPLCAQRNNTLSKRRRQQ 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1404 344 Gene3D Classic Zinc Finger 50 143 - -
Prci6g1404 344 ProSiteProfiles Zinc finger B-box type profile. 50 97 IPR000315 GO:0008270
Prci6g1404 344 FunFam B-box zinc finger protein 22 51 143 - -
Prci6g1404 344 Pfam B-box zinc finger 104 144 IPR000315 GO:0008270
Prci6g1404 344 PANTHER B-BOX ZINC FINGER PROTEIN 22 51 323 - -
Prci6g1404 344 SMART bboxneu5 50 97 IPR000315 GO:0008270
Prci6g1404 344 SMART bboxneu5 102 149 IPR000315 GO:0008270
Prci6g1404 344 MobiDBLite consensus disorder prediction 163 197 - -
Prci6g1404 344 CDD Bbox1_BBX-like 106 149 - -
Prci6g1404 344 MobiDBLite consensus disorder prediction 247 262 - -
Prci6g1404 344 CDD Bbox1_BBX-like 55 97 - -
Prci6g1404 344 MobiDBLite consensus disorder prediction 247 273 - -
Prci6g1404 344 SUPERFAMILY B-box zinc-binding domain 95 144 - -
Prci6g1404 344 ProSiteProfiles Zinc finger B-box type profile. 102 149 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1404 Prci-Chr6 10498410 10502945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1404 51 343 C2C2-CO-like Transcription Factor Family AT1G78600 45.075 1.01e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Prci6g1404 zf-B_box 3.7e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci6g1404 6 10498410 10502945 Prci6g1404 6 10498410 10502945 ECH