Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1850 ATGATGTCAAAGGAAGAAAATAATCCTCCTTCGAAGCCAGAAGCAGCCAAAGAAGATGGCAGCCAGAGCTCCGGCGGCAGGAAAAACGCCTCCTCTAGGCCACCAGAACAAGCCCTGAAGTGTCCAAGGTGTGACTCGCCCAACACCAAATTCTGTTACTACAACAATTACAGTCTGACGCAGCCAAGGCATTTCTGCAAGACGTGCCGTAGGTACTGGACGAAGGGTGGAGCCCTGCGCAACGTTCCGATTGGTGGCGGCTGCAGGAAGAACAAGAAGGTGAAGTCTTCGTCTTCAAGGCTCCCCGGCGACCCCAAGGACGCCGGATTCCCGGGGGAGCTTGGTGGCTTCAAGTTTTTCCATGGGCTTTCACCCTCACTGGATTTTCATCTTGGAGGATCCTTATTACCCTTCCCTAAACTTAACCATCTTCATCCTCCAGCCATATATAACCAGGTCTCTTCCTTCGGGGATGTTCAAGCAGCCACCTTTGATCCGTCCGGAAGCTCAAATTCTATGATGAATTTCAATTACCCATCTCCAGGAGGAGGATTCAGCAGCGTAATTCAGGGTATGAGCTCTATGAACGTTAACAGCAGCCTTGCTTCTTCAATTGAATCATTGAGTTCGGTTAATCAAGACTTGCACTGGAAGCTACAGCAGCAGAGGTTGGCGGTGCTGTTTGGCGGTGATGATAATGGCCAGAAAGACGATGGTGTTTCGGCGGTTACTCTTGAGAACCAAATCCAGAGACCACAACCAATTTTGTTTCAGAATCTTGAGATTTCAAAGCCGGAGATCAATTGCGTTGCTGCTGGTAATTCCAGAAAAGAAGGCCCAGCTTCTGGTGATCCGCCTACAGAGTGGTTCTTTGGGAATTCTTTTGCTTCTGTGACTCCAACGCCTGCAAGTACCAGTAGTGGTGGGAATAATGGCCATGATAATGCAACCAATAACTGGGGTTCCGTTCATGCTTGGGGTGACGTGCAGCAGCAATATAATGCTTTGCCCTAG 1014 0.4941 MMSKEENNPPSKPEAAKEDGSQSSGGRKNASSRPPEQALKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVKSSSSRLPGDPKDAGFPGELGGFKFFHGLSPSLDFHLGGSLLPFPKLNHLHPPAIYNQVSSFGDVQAATFDPSGSSNSMMNFNYPSPGGGFSSVIQGMSSMNVNSSLASSIESLSSVNQDLHWKLQQQRLAVLFGGDDNGQKDDGVSAVTLENQIQRPQPILFQNLEISKPEINCVAAGNSRKEGPASGDPPTEWFFGNSFASVTPTPASTSSGGNNGHDNATNNWGSVHAWGDVQQQYNALP 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1850 337 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 23 160 IPR045174 GO:0003700|GO:0006355
Prci5g1850 337 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Prci5g1850 337 MobiDBLite consensus disorder prediction 300 322 - -
Prci5g1850 337 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Prci5g1850 337 MobiDBLite consensus disorder prediction 1 41 - -
Prci5g1850 337 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1850 Prci-Chr5 36558310 36560063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1850 2 337 C2C2-Dof Transcription Factor Family AT5G65590 42.373 2.17e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Prci5g1850 zf-Dof 5.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1850 - - gmx:100780729 407.912