Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1327 ATGCCTTCCATGGCTCAAGGAGGATTCAGAAACTTTACCGGCAACCAGAAGCCTGGCAGTAAATTATCCAATGAAAATCAGAATCGTCAAACTGATTTCCCTTCCCGGAGACAGAAGATTTTACAACAAAGGAAGTCACTTCCTATTGCTTCAGAGATCCCCCAATTCCTGTTTGATGCTGGATTTTGTCTTGATGGGAAAGTTATTGGGATAACTCAACCCCGGCGTGTTGCTGCTGTTACTGTAGCAAAACGGGTTTCTGAGGAATGCGGTGTTGAATTGGGCCAAAGGGTTGGTTACTCTATTAGATTTGATGATGCTACTTCAAGTTCAACAAGGATTAAATACATGACAGATGGGTTGCTTCTGAGGGAATCCTTGTTGGATCCATTTCTTTCCAAGTATTCTGTTATAATTGTTGATGAAGCCCATGAGAGAACTGTACACACTGATGTCTTGATTGGCCTGCTTAAAAATGTGCAACATGCTCGTTCTGATATTCTTTCTGACGGTCAGAGCCTTAACTCTGAAAACAAGAATGTAAAGAGTGGCATGTCATTGGAGAAAGAAAATGGTGGTCAGCGTGGCAGTTTTCTTAGGAAGCACAATAACAGAAATTATGCTCCACTGAAGCTAATCATTATGTCTGCAAGCCTTGATGCGCGAGTGTTTTCTGAGTACTTTGGCGGTGCAAAAGCTGTTCATGTTCAAGGGAGGCAATTTCCTGTTGATATATTTTACACTCGCCATGCAGAGGCAGATTATTTAGATGCTTCCTTGATAACAATATTCCAGATTCATTTGGAGGAGGGCCCTGGTGATATACTAGTATTTCTGACTGGGCAAGAAGAGATTGAATCTATTGAAAGGCTCATAAATGAGCGACTCAAGCAGTTACCTGAAGGCAGCCAGAAGCTTCTAACTGTGCCTATATTTGCAGCTCTTCCTTCTGAGCAGCAAATGCGAGTGTTTGCACCAGCTCCATCTGGATTTCGCAAGGTAATATTAGCAACTAATATTGCTGAAACATCAGTAACAATTCCTGGAATCAAGTATGTAGTAGATCCTGGATTTGTTAAAGCACGCACTTATGACCCTGGCAAAGGAATGGAATCTTTGGTTGTGGTACCTACATCCAAGTCCCAAGCTCTGCAAAGGAGTGGGCGTGCAGGGCGTGAGGGACCTGGAAAATGTTTTCGTCTCTATCCAGAAATTGAATTTGAGAAACTCGAGGACTCAACAAAGCCAGAGATTAAGCGATGCAACCTCTCCAATGTTATTTTGCAGCTTAAGGCTTTAGGTGTTGATGACATACTAGGGTTTGATTTCATTGAGAAACCTTCAAGGGCAGCTATCATCAAATCATTGGAGCAGCTATTCTTGTTAGGTGCTCTAACAGATGACTGTCAACTATCTGATCCAGTTGGAATTCAAATGGCTCGGCTTCCCTTGGACCCTATTTATTCTAAAGCTCTTATTTTAGCTAGTCAGTTTAACTGCTTGGAGGAGATGTTGATAACCGTTGCAATGCTTTCTGTGGAATCCATATTTTATGCTCCCCGTGATAAGTTAGAAGAGGCAAGAACTGCAATGAAATGCTTCTCAAGTCCAGAAGGAGACCACCTTACTTTGATTAATGTGTACCGGGCATCTAATGAGTTCCTAGAAAAGAGATTGATGGGAATGGGTAATGCCAAAAGTGAAAAGGCTCTGAGAAAGTGGTGTAAAGAAAACTTTATCAATAGCCGTTCTCTTAAGCATGCTCTTGACATTCACAAGCAAATTTCTGTGAATGTTGAACAAATGGGTTTGCATGTTGCTTCTTGTGGAGATGATACACTTCAATACCGCAGGTGCCTTGCTGCTTCCTTTTTCCTGAATGCAGCTGTAAAGCAGCCAGAGGGAACATACAGGGCCCTCGCAAGTGGTCAGGTGGTGCAGATCCACCCTTCTTCAGTATTATTTCAACAAAAGCCAGAGTGCATAATATTTAATGAACTGGTCCAAACAAATAACAAGTATATACGGAATGTAACCAGAATCGACTACCTATGGTTGACTGAGCTGGCTCCTCAATATTATGCTGTGCAGAGTTAA 2097 0.4206 MPSMAQGGFRNFTGNQKPGSKLSNENQNRQTDFPSRRQKILQQRKSLPIASEIPQFLFDAGFCLDGKVIGITQPRRVAAVTVAKRVSEECGVELGQRVGYSIRFDDATSSSTRIKYMTDGLLLRESLLDPFLSKYSVIIVDEAHERTVHTDVLIGLLKNVQHARSDILSDGQSLNSENKNVKSGMSLEKENGGQRGSFLRKHNNRNYAPLKLIIMSASLDARVFSEYFGGAKAVHVQGRQFPVDIFYTRHAEADYLDASLITIFQIHLEEGPGDILVFLTGQEEIESIERLINERLKQLPEGSQKLLTVPIFAALPSEQQMRVFAPAPSGFRKVILATNIAETSVTIPGIKYVVDPGFVKARTYDPGKGMESLVVVPTSKSQALQRSGRAGREGPGKCFRLYPEIEFEKLEDSTKPEIKRCNLSNVILQLKALGVDDILGFDFIEKPSRAAIIKSLEQLFLLGALTDDCQLSDPVGIQMARLPLDPIYSKALILASQFNCLEEMLITVAMLSVESIFYAPRDKLEEARTAMKCFSSPEGDHLTLINVYRASNEFLEKRLMGMGNAKSEKALRKWCKENFINSRSLKHALDIHKQISVNVEQMGLHVASCGDDTLQYRRCLAASFFLNAAVKQPEGTYRALASGQVVQIHPSSVLFQQKPECIIFNELVQTNNKYIRNVTRIDYLWLTELAPQYYAVQS 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1327 698 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 583 IPR027417 -
Prci5g1327 698 Gene3D - 441 546 - -
Prci5g1327 698 MobiDBLite consensus disorder prediction 171 200 - -
Prci5g1327 698 SMART helicmild6 286 394 IPR001650 -
Prci5g1327 698 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 240 414 - -
Prci5g1327 698 Gene3D - 8 239 IPR027417 -
Prci5g1327 698 FunFam ATP-dependent RNA helicase DHX8 441 538 - -
Prci5g1327 698 SMART ultradead3 8 246 IPR014001 -
Prci5g1327 698 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 54 237 IPR014001 -
Prci5g1327 698 Pfam Helicase conserved C-terminal domain 264 393 IPR001650 -
Prci5g1327 698 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 260 434 IPR001650 -
Prci5g1327 698 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 617 693 IPR011709 -
Prci5g1327 698 SMART ha2_5 454 545 IPR007502 GO:0004386
Prci5g1327 698 MobiDBLite consensus disorder prediction 1 38 - -
Prci5g1327 698 CDD SF2_C_RHA 241 402 - -
Prci5g1327 698 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 136 145 IPR002464 -
Prci5g1327 698 Gene3D - 240 413 IPR027417 -
Prci5g1327 698 Pfam Helicase associated domain (HA2) 455 579 IPR007502 GO:0004386
Prci5g1327 698 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 163 IPR027417 -
Prci5g1327 698 PANTHER ATP-DEPENDENT RNA HELICASE 52 686 - -
Prci5g1327 698 MobiDBLite consensus disorder prediction 171 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1327 Prci-Chr5 32583158 32590950 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci5g1327 5 32583158 32590950 Prci5g1327 5 32583158 32590950 ECH