Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1200 ATGAAAAGAGAGGAAGATCATGGGCAGTGTTCTTCGCAAGCCATAAACAACTTTCACAGCTATCAAGAGCAGCTGCTTCTGCAACAGATGCAGCAACAGAACAGTATGTTTCCTGAAGTTTCTCCAATCCTTCAGCCATGGAATATTCCTCCGGTTCACTCCTTCAACCAGGCGGCCCACCATCATCACTTCGCCAATCCGGTCCGAGTCGACCAACACGACCCGTTTCTTCTTCCTCCGCCGCCACCTCCTCCTCCGGCTGGACCCTACGCCGGTTTGTTTAACCGGAGGGTTCCTTCTCTGCAGTTTGCCTACGACGGCTCAGCTTCCGACCATCTCCGGATCTTATCGGAGGCTCTTGGACCCATGGTTCAGCCCGGTTCAGCTCCGTTCGGCCTGCAGGCCGAGTTGGGCAAGATGACGGCTCAAGAAATTATGGACGCTAAGGCTCTTGCAGCGTCTAAGAGTCACAGTGAAGCTGAAAGGAGACGCAGGGAGAGAATCAATAACCATCTCGCCAAGCTTCGAAGCTTATTGCCCAGTACAACCAAAACGGATAAAGCATCGTTGCTAGCAGAAGTGATTCAGCATGTGAAGGAACTGAAGCGCCAGACGTCACTGATAGCAGAAACGAGCCCAGTGCCGACGGAAGTCGACGAGCTGACGGTGGACGCCGCCGACGAGGACGGCAAGTTAGTGATCAAAGCCTCGTTCTGCTGCGAGGACAGGTCGGATCTGTTGCCGGAACTGATCAAAGCGCTGAAAGCACTCAAGCTAAGAACCCTCAAAGCCGAGATCACCACTCTGGGTGGACGCGTGAAGAATGTGTTGTTCATTACAGGGGAAGACGGTGGCGGCGACTCATCAAGCAGCGACGAGCAACATCATCATAATTATCATCTTGATGATGAAAGCCAGAGGATGATGCAGCAGCAACAGTACTGTATAAACTCGATACAAGAAGCTCTTAGGGCTGTGATGGAGAAGAGTGGTGGTGGGGAAGAGACGGCAAGTGGGGGTATCAAGAGACAAAGGACTAATAACCTTAATATCCTCGAACACAGGTCTTTATAA 1074 0.5186 MKREEDHGQCSSQAINNFHSYQEQLLLQQMQQQNSMFPEVSPILQPWNIPPVHSFNQAAHHHHFANPVRVDQHDPFLLPPPPPPPPAGPYAGLFNRRVPSLQFAYDGSASDHLRILSEALGPMVQPGSAPFGLQAELGKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTEVDELTVDAADEDGKLVIKASFCCEDRSDLLPELIKALKALKLRTLKAEITTLGGRVKNVLFITGEDGGGDSSSSDEQHHHNYHLDDESQRMMQQQQYCINSIQEALRAVMEKSGGGEETASGGIKRQRTNNLNILEHRSL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1200 357 CDD bHLH_AtAIG1_like 147 225 - -
Prci5g1200 357 SMART finulus 158 207 IPR011598 GO:0046983
Prci5g1200 357 PANTHER TRANSCRIPTION FACTOR BHLH30 19 350 IPR045847 GO:0003700|GO:0006355
Prci5g1200 357 Pfam Helix-loop-helix DNA-binding domain 155 201 IPR011598 GO:0046983
Prci5g1200 357 MobiDBLite consensus disorder prediction 330 349 - -
Prci5g1200 357 FunFam transcription factor bHLH30 147 210 - -
Prci5g1200 357 Gene3D - 147 208 IPR036638 GO:0046983
Prci5g1200 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983
Prci5g1200 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 208 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1200 Prci-Chr5 30993095 30995667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1200 11 355 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 52.368 2.80e-104 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci5g1200 HLH 1.8e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci5g1200 5 30993095 30995667 Prci5g1200 5 30993095 30995667 ECH