Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0245 ATGAGCATGGTCATTGATACCAGGAAGGATATGGATCGGATCAAGGGCCCCTGGAGCCCCGAAGAGGACGACGCCTTGCAGAAGCTGGTGGAGAAGCACGGACCTAGGAATTGGTCCCTGATCAGCAAGTCCATTCCGGGTCGGTCGGGCAAATCTTGTCGTCTCCGATGGTGTAATCAGCTCTCTCCGCAGGTGGAGCACCGGCCTTTCTCGCCGGAAGAGGATGAGACTATTATTCGGGCTCATGCCCGATTCGGCAACAAATGGGCCACCATAGCCCGGCTTCTATCGGGTCGAACCGATAACGCCATCAAGAACCACTGGAACTCCACCTTGAAGCGCAAGTGTGCGTCCATGATGATGGATGAAGCCGGCCCTGGTGCCGGCGGATATGATGGCAGTTTCAGCTCCCAGCCGCTGAAGAGGTCGGTGAGCGCTGGAGCTGCCATCCCGGTATCGACGGGGTTTTACGTTAACCAGCAGACGCCTAGTAGCCCGTCCGGATCAGACGTTAGCGATTCCAGTGTGCCGGTAGCTTCTTCTTCCCATGTTTACAGGCCTGTGGCGAGAACCGGCGGTGTTCTACCTCCCGTAGAAACGACGTCTTCATCGAACGAACCTGCTACTTCATTATCCCTATCACCTCCCGGGGTGGACTCTTCAGAAGTCTCGAATCGTGCTTCGGAGTTAACACATGCCGCCCCGTTAACGAATACTATGCGTCTGTTACCAGCAATGCTTTCGGCCCCGGCATCCTCTGCAGCTCCACCGCTGCCTCCAGCAGGCGCAGCGATGTCTTTGCAGCATCAGGTTCATTTAGGTCTATGCAATTGGAGGAGCGGTGACGCTGGCTCATCGACGGCGAATCCTAATGGAGGCGCGCCATTCAATTTCAGTGCAGAGTTGCTGGCTGTGATGCAGGAGATGATAAAGACGGAGGTGAGGAGTTATATGGCGGGGTTAGAGAAGAGGCAGCTCATGGATTTGCGAACGCTTCAGTGA 1002 0.5579 MSMVIDTRKDMDRIKGPWSPEEDDALQKLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSPEEDETIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASMMMDEAGPGAGGYDGSFSSQPLKRSVSAGAAIPVSTGFYVNQQTPSSPSGSDVSDSSVPVASSSHVYRPVARTGGVLPPVETTSSSNEPATSLSLSPPGVDSSEVSNRASELTHAAPLTNTMRLLPAMLSAPASSAAPPLPPAGAAMSLQHQVHLGLCNWRSGDAGSSTANPNGGAPFNFSAELLAVMQEMIKTEVRSYMAGLEKRQLMDLRTLQ 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0245 333 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci5g0245 333 CDD SANT 69 112 IPR001005 -
Prci5g0245 333 PANTHER MYB PROTEIN-RELATED 15 199 - -
Prci5g0245 333 Pfam Myb-like DNA-binding domain 18 76 - -
Prci5g0245 333 MobiDBLite consensus disorder prediction 196 224 - -
Prci5g0245 333 MobiDBLite consensus disorder prediction 190 224 - -
Prci5g0245 333 FunFam MYB transcription factor 15 66 - -
Prci5g0245 333 MobiDBLite consensus disorder prediction 1 21 - -
Prci5g0245 333 FunFam Transcription factor MYB44 69 115 - -
Prci5g0245 333 ProSiteProfiles Myb-like domain profile. 10 61 IPR001005 -
Prci5g0245 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 65 IPR017930 -
Prci5g0245 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 116 IPR017930 -
Prci5g0245 333 CDD SANT 17 59 IPR001005 -
Prci5g0245 333 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Prci5g0245 333 SMART sant 14 63 IPR001005 -
Prci5g0245 333 SMART sant 66 114 IPR001005 -
Prci5g0245 333 Gene3D - 68 125 - -
Prci5g0245 333 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0245 Prci-Chr5 3414898 3416385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0245 7 323 MYB Transcription Factor Family AT4G37260 51.875 1.11e-100 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci5g0245 Myb_DNA-bind_6 1.9e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1338 2 10104127 10105859 Prci5g0245 5 3414898 3416385 ECH
Prci5g0245 5 3414898 3416385 Prci5g0245 5 3414898 3416385 ECH