Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0243 ATGCCATTCATTGTGACGAACATGGCTCTCACAAATGATGCCCAGAACTCGTTCTTCCTAGACGAGCTTCTCTGTGAGGAAGACGGTTTTTCAGAGGATGGTACTCAAGGAGAGACATACGGGGAAAAGTCCCCATCTTTGCCTTTGATTTTGTTACACAATGATATTTTCTTGGACGACGATGATCTTGCCTCTCTAATATCAAAAGAAAGAGGGACCCATTACGGTCTTGGTAATCTAATAATCGATGAGCCTCTCAAGGAAGCTCGCGAAGAGGCTGTGTTCTGGGTTTTGAAGGTTTCTGCTCACCACAATTTCTCTGCTCTGACCACTGTTCTTGCTGTGAACTACTTCGATCGCTTCATCCAAAGTCTAATCTTTCGGAGAGACAAGCCATGGACGACACAGCTCGCTGCAGTTGCTTGTTTATTTCTGGCTGCAAAAGTGGAGGAGACTCCTGTGCCGCATCTCGCAGACCTTCAAGTGGAGGAATCCAAGTATGAATTCGAAGCAAAAGATATAAAGCGAATGGAGCTTCTAGTGTTATCAACTCTTCAATGGAAGATGAATCCTGTGACTCCAATTTCTTTCTTCGGCCACATTGTGAGAACACTCCGTTTAAAGAGCCACTCGCACTGTGAATTCCTCTTGCGATGCGAACGCGTTTTGCTTTTACTGCTCGCGGATTCGAAGGTTATGAGTCATCTTCCTTCCATAATAGCTGCGGCTACAATGGTCCACGTTATCCGGGACATTGAACCGTTTAATGCTGGGGAATACAGAAACCAGCTTCTGGGTTTACTCAAAATCAACGAGGAACAAGTGAACCAGTGCTACAAACTTGTTTTGAAAATACTATGGTGTCATGAAGACATCCAAAATCTTCAAAGCAGACGCGAACGCCCATCTGAACCGAGAAGCCCAGATGGTGTCATCGATGCTTTCTTTAACTATGATAGTTCGAATGATTCGTGGGCCGTAGGATCAGTCTCAGTTTCAGAGGAGCCAATGTTGAAGAAGAATCGATCTCAGTCTCAGGAGCAGCCTATGCAATTGGCTTCATAA 1065 0.4498 MPFIVTNMALTNDAQNSFFLDELLCEEDGFSEDGTQGETYGEKSPSLPLILLHNDIFLDDDDLASLISKERGTHYGLGNLIIDEPLKEAREEAVFWVLKVSAHHNFSALTTVLAVNYFDRFIQSLIFRRDKPWTTQLAAVACLFLAAKVEETPVPHLADLQVEESKYEFEAKDIKRMELLVLSTLQWKMNPVTPISFFGHIVRTLRLKSHSHCEFLLRCERVLLLLLADSKVMSHLPSIIAAATMVHVIRDIEPFNAGEYRNQLLGLLKINEEQVNQCYKLVLKILWCHEDIQNLQSRRERPSEPRSPDGVIDAFFNYDSSNDSWAVGSVSVSEEPMLKKNRSQSQEQPMQLAS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0243 354 CDD CYCLIN_AtCycD-like_rpt1 89 187 - -
Prci5g0243 354 MobiDBLite consensus disorder prediction 335 354 - -
Prci5g0243 354 Gene3D - 87 190 - -
Prci5g0243 354 SUPERFAMILY Cyclin-like 175 292 IPR036915 -
Prci5g0243 354 CDD CYCLIN_AtCycD-like_rpt2 192 282 - -
Prci5g0243 354 SUPERFAMILY Cyclin-like 68 190 IPR036915 -
Prci5g0243 354 PANTHER CYCLINS 90 284 IPR039361 -
Prci5g0243 354 Pfam Cyclin, C-terminal domain 192 291 IPR004367 -
Prci5g0243 354 Pfam Cyclin, N-terminal domain 87 190 IPR006671 -
Prci5g0243 354 Gene3D - 191 280 - -
Prci5g0243 354 SMART Cyclin_C_2 192 310 IPR004367 -
Prci5g0243 354 MobiDBLite consensus disorder prediction 336 354 - -
Prci5g0243 354 SMART cyclin_7 95 183 IPR013763 -
Prci5g0243 354 FunFam CYCLIN D32 191 280 - -
Prci5g0243 354 FunFam D6-type cyclin 77 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0243 Prci-Chr5 3325180 3327001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0243 8 354 Core Cell Cycle Gene Families AT5G67260 47.297 2.21e-91 277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci5g0243 5 3325180 3327001 Prci10g0524 10 3447779 3450341 CCT
Prci10g0524 10 3447779 3450341 Prci5g0243 5 3325180 3327001 ECH
Prci2g1341 2 10145461 10147284 Prci5g0243 5 3325180 3327001 ECH
Prci5g0243 5 3325180 3327001 Prci5g0243 5 3325180 3327001 ECH