Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0170 ATGATCCAAGAACTGTTGGGCGGTTCTTCTGGTTTCATTTCAACGGGAGAAAGGAAAATCTCCATTAACGCCGCTGGTGTTCTTGCACCTCACATACCATCTCCTCCTCTACCTTCTTCCACCACCACTGCCACCACCTCCGCTGCTGCCGCCGCTACCCCAGCTGCTGCCCCCGCCGCTGCCTCGTCAAATTCAGAAAACCAGAACTTGAGGTGTCCCCGGTGCGATTCATCAAACACAAAATTTTGTTACTACAACAACTACAATCTCACTCAGCCTCGCCACTTCTGCAAGACATGTCGCCGGTACTGGACCAAAGGAGGATCTCTAAGAAACGTTCCAATCGGAGGTGGTTGCCGGAAAAACAAGAGCGTCAGCGCGTCAACCAACTCTGTGGCGAAGACGAGTGGGGCCGTGGGTAAGGTGAAAACGGCTGCGTCTGAGCTTGGAAGTAGGTCATCAGGACTTGGTGGCGGCGGCGTCTTCGATCATCCGGATCTTCCGGCAAGCCCAATTTTGTGGGGCTCGCCACAAAATTCTCACCTGTTGGCTTTGCTGAGAGCTAGCCAGAACCCTAACCCTAGCCCTTGTCCAAACAATCTCATGCCTAATAATGCTGTGAATCCGAAGGAAGAAGGGAACTTGATGAGATCCCACATGGTGACTGAACCAATGGGCTCTAATGGCCTTCTGAATGTTCCTGCAACCTCGGGCTTTGATCCTTCACTCGGTCTCACGAGCTCTTTCTGGAGAAACAACAATCTCGATCAGCCACAAAATGGAGGCTTTGTATTTGGCGAGCACCAACACCAGAACAGTGGGATCCAAGAACTCTACCAGAGGCTCAGGTCCTCTTCTTCGGCTAACTATTGTAGTGACGACTCATCATCGCCGTTTCTAAGCAACATGGCTTCTTCTTCTTTATCATCATCTTCCTCTGTAGCCATTTTGGAGTCATCATCAACTCCAGCTAATGGAAGCGGAATTGGATTGGGGTACTGGAATCAACCTCTTTTCTGGTCTGATCTTCCCACGACCAATGGTGCTCATCCGTAA 1056 0.5076 MIQELLGGSSGFISTGERKISINAAGVLAPHIPSPPLPSSTTTATTSAAAAATPAAAPAAASSNSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGSLRNVPIGGGCRKNKSVSASTNSVAKTSGAVGKVKTAASELGSRSSGLGGGGVFDHPDLPASPILWGSPQNSHLLALLRASQNPNPSPCPNNLMPNNAVNPKEEGNLMRSHMVTEPMGSNGLLNVPATSGFDPSLGLTSSFWRNNNLDQPQNGGFVFGEHQHQNSGIQELYQRLRSSSSANYCSDDSSSPFLSNMASSSLSSSSSVAILESSSTPANGSGIGLGYWNQPLFWSDLPTTNGAHP 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0170 351 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 59 278 IPR045174 GO:0003700|GO:0006355
Prci5g0170 351 ProSitePatterns Zinc finger Dof-type signature. 72 108 IPR003851 GO:0003677|GO:0006355
Prci5g0170 351 ProSiteProfiles Zinc finger Dof-type profile. 70 124 IPR003851 GO:0003677|GO:0006355
Prci5g0170 351 Pfam Dof domain, zinc finger 68 124 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0170 Prci-Chr5 2499150 2500707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0170 34 167 C2C2-Dof Transcription Factor Family AT5G60200 50.725 2.10e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Prci5g0170 zf-Dof 2.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0170 - - cave:132187159 318.161