Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g3042 ATGCAGGAAAGCAAAGACCCTGCAATTAAGCTCTTTGGGAAGAAGATTCCATTGCAGGGTGAAGGCGACGATTCTTTAGCTTCACAGGTGGCCATTGATGTCGAGAAAGGAGGAGGAGTGCAAAAACCAGAAGAGGAAGGGGATGAAGCAGACAAGGAATCACAATCTGGAAAAGTCACGGAGGGCACTGAACACCTTCCAGACACAAGCATAAACCCGAAAACACTTTCGATGGACGAAGAAACTGCAAAAACTTCAGAGAATGATGATGGAATCAACTCGGAGGAAAAAACACTGAAGAAGCCAGATCAAGTGCTTCCATGTCCTCGCTGCAATAGTATGGACACGAAGTTCTGTTACTACAACAACTACAACATCAATCAGCCTCGCCATCTCTGCAAATCCTGTCAAAGATACTGGACAGAAGGTGGCACCATGAGGAATGTTCCAGTAGGTGCAGGACGACGAAAAACCAAGAATACCTCTCATTATCGCTACGTCGCCATTAATGAGGCTCTTCGAGTAGCCCGAATTGTTGCTCCTAATGGAACTCATGGAAAAGTTCTCAGCTTTGGATCAGGTGCACACACGTGTTCTGTCCTGAATCTTGCAGGTAACAAAAGCGTTTCTAAAAGTACCCGAAATCGGTTCCACAATCATATCTCCGAGAATCAGAGAAATACATCTTCCATTGAAGAAATCAAGAAAAACACCCTTCAAAACCCATGTCTTCCTGATGTTCCCTGGCCGCACCCTCCAGGTTTTCCTCCCCTGTCATCCAATCATCCTGCAGCTTTTTGGAATGTAAATCTTCCTTGGTTTTCCGCAAACTCATCTTCTGCAATCTTAAAGTCATCGGGATGTGGTCCGAATTCTCTGATATTGGGAAAGCACGCAAGGGACGGGGACATGCTTGGACCAGGGTATCAGCAGAAAGAACCACCGAAACAGAGAAATGGCTCTGTTTTGGTGCCTAAAACATTGAGAATTGATGGGCCGAGTGAGGCTGCCAAGAGTTCAATATGGGCAACTTTAGGAATAAAGAACGAATCACTGAGTGGTGGAAGCATGTTCGAGGCGTTTCTTTCGAGGAAAGATGGGAAGAATCATAGACACCACAGAGTTGAAACCTCTTCGGTGTTAAGGGCCAACCCAGCAGCCTTGTCTAGATCCGTTTATTTTCATGAGAACGCGTGA 1197 0.4578 MQESKDPAIKLFGKKIPLQGEGDDSLASQVAIDVEKGGGVQKPEEEGDEADKESQSGKVTEGTEHLPDTSINPKTLSMDEETAKTSENDDGINSEEKTLKKPDQVLPCPRCNSMDTKFCYYNNYNINQPRHLCKSCQRYWTEGGTMRNVPVGAGRRKTKNTSHYRYVAINEALRVARIVAPNGTHGKVLSFGSGAHTCSVLNLAGNKSVSKSTRNRFHNHISENQRNTSSIEEIKKNTLQNPCLPDVPWPHPPGFPPLSSNHPAAFWNVNLPWFSANSSSAILKSSGCGPNSLILGKHARDGDMLGPGYQQKEPPKQRNGSVLVPKTLRIDGPSEAAKSSIWATLGIKNESLSGGSMFEAFLSRKDGKNHRHHRVETSSVLRANPAALSRSVYFHENA 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g3042 398 MobiDBLite consensus disorder prediction 301 320 - -
Prci4g3042 398 ProSiteProfiles Zinc finger Dof-type profile. 106 160 IPR003851 GO:0003677|GO:0006355
Prci4g3042 398 MobiDBLite consensus disorder prediction 1 97 - -
Prci4g3042 398 MobiDBLite consensus disorder prediction 80 97 - -
Prci4g3042 398 Pfam Dof domain, zinc finger 103 160 IPR003851 GO:0003677|GO:0006355
Prci4g3042 398 MobiDBLite consensus disorder prediction 38 59 - -
Prci4g3042 398 ProSitePatterns Zinc finger Dof-type signature. 108 144 IPR003851 GO:0003677|GO:0006355
Prci4g3042 398 PANTHER CYCLIC DOF FACTOR 2 1 397 IPR045174 GO:0003700|GO:0006355
Prci4g3042 398 MobiDBLite consensus disorder prediction 60 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g3042 Prci-Chr4 41947069 41949132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g3042 1 396 C2C2-Dof Transcription Factor Family AT3G47500 41.850 5.20e-91 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Prci4g3042 zf-Dof 4.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g3042 - - gsj:114409713 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g3042 4 41947069 41949132 Prci9g1536 9 28172800 28176160 ECH
Prci4g3042 4 41947069 41949132 Prci4g3042 4 41947069 41949132 ECH