Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0739 ATGGCAGATCTCGCTGGCAATGTAAATATTGAGCAAGCACTCATTGCTTTGAAAAAAGGCACTCAATTAATTAAGTATAGTCGGAAAGGAAAGCCAAAACTTTGTCCATTCAGACTCTCACCGGATGAAACAATATTGATTTGGATAACTCACAGAGGGGAAAGAAATCTGAATTTGTCTGGTGTTTCACATATTATCTCTGGACAGAGAACGGCTGTCTTTAGAAGATACTTGTGTCCTGAAAAGGATTCTTTATCATTTTCTCTTCTTCACAAAAACAGTGAACGGTCACTTAATCTGATTTGTAAGGATAAAGCTGAAGCAGATGTATGGTTTACAGGCCTTAAGGCATTAATATCTCCTGGACAACGTAGCAGGCATAGGCATACCAGAAGCGACTTTTCTAGTCTGCAAGGGAGCATTGACTTTACTCATGATGGTCGTCCTTTCAGTGCAACGGTAGAGTATCCTTCAAGCAGTCTTCATGGTCGAGTTTCCATTGATTCAGCTTCTCGTGACACTTTATTGAATTGGGCAAACTCAGATGTGGGATTAGAACGTGCAAACATGCAACTGAGGGTAGGTGCTGGAGACAATTTCCGTCTTAGTGTGTCAAGTGCAGGATCTGGACTAGATGACATAGAATCGCTTGGAGATGTTTATGTATGGGGAGAGGTTTGGTCAGATGGGATTTCGTCTGATGGATTGGGGAATCAGGTCCCTATGAAGACAGATTTCTTGATTCCTAAGCCATTAGAATCAAATGTTGTTCTTGATGTTCAACAGATTGCATCTGGGGTCCACCATACTGCTCTAGTTACAAGGCAAGGAGAGCTTTTTACTTGGGGAGAAGAGTGTGGGGGAAGACTTGGTCATGGGATTGATAAAAGCTTCAGCCGCCCTCGTCTAGTTGAATTCCTAGCAGTTACTAATGTGGAATTTGTTGCATGTGGAGAGTATCACACGTGTGTTGTATCTACATCCGGTGATTTATTTTCTTGGGGTGATGGCACACACCACGCTGGACTTCTTGGTCATGGAACTGACATTAGCCACTGGATACCAAAGAGAATCGTAGGCCCTTTAGAAGGACTTCAAGTTTTATCTGTTGCATGTGGCACATGGCATTCAGCATTGGCAACCTCCAATGGAAAATTGTTTACCTTCGGTGATGGAGCATTTGGTGTCTTGGGCCATGGAGATCAAGAGAGTGTGTCATATCCAAAGGAGGTGCAATCATTGAGCGGACTAAAGACCATTAAGGTTGCATGTGGAGTTTGGCACACTGCAGCTATTGTAGAGGTTATGGGCCAAATTGGCTCAAATGTCTCCTCAAGGAAGCTCTTCACTTGGGGTGATGGTGATAAATATCGTTTAGGTCACGGTAACAAGGAAACTTACCTCCAACCCACCTGTGTCTCTACACTTATTGAATTCAATTTCCAGCAAGTAGCATGTGGGCGCACTCTGACGGTCGCCCTCACTACAACTGGTCAAGTCTTCACAATGGGAGGCACTGCAAATGGCCAACTAGGGAATCCTCTATCTGATGGAAAAGCACCTGTCATGGTACAAGATAAGTTGGTTGGTGAATTTGTTGAGGAAATAGCATGTGGAGAACATCACGTTGCTGCCTTAACGTCGAGAAGTGAACTATATACCTGGGGGAAAGGTGCCAATGGAAGACTGGGACATGGAGACATAGACGATCGGAAGTCTCCAACAATGGTTGAAGGCTTAAGAGATAGGCATGTAAAAAGCATTTCATGTGGCTCAAACTTCATGTCTTGTATTTGCATCCATAAATGGGTCTCTGGAGTTGACCAGTCTATTTGCTCTGGTTGCCGGCAAGCATTTGGTTTTACTAGAAAAAGGCACAATTGTTATCATTGTGGATTGGTACATTGTCACTCTTGTAGCTCTAAGAAGGCATTGAAAGCAGCACTAGCTCCAACGCCAGGAAAACCACATCGTGTTTGTGATGCATGTTATGCGAAACTTAAAACAGTTGATGTTGGCCACGCTTCCACTTTTAGCAGAAGAACTACTCCGCGTAGATCAATAGATAATAGAGAGAGAATAGAATGGGTAGATACAAGGTCTTCAAGAGTTCTCTTATCTCCCATCACAGAACCTGTAAAATACCTTGAGATAAGGACTAATAAGCCAGGAAGGAGGTCAGATTCCTCTTCCATAGTTCGAGCTTCTCAAGTTCCATCACGTTTACAGTTGAAAGATATTGCATTTCCAAGTTCACTGAGCACCATTCAGAATGCTTTCAAGCCTGCTGTTATACATCCTAGTCCACCACGAACCCCACCTGCCAATTCTAGATCTTCATCACCATATGCAAGAAGACCCAGCCCACCCCCTTCACCCGCTCCTGGATTTTCTAAAAGTATTATAGATAGTTTGAGGAAGACCAATGAGATCTTGAATCAAGAAGTCTCAAAATTGCATAAACAAATTCAAAGTTTAAGGCAGAAGAACGAGACACAAGACAAGGAGATACAGAAGCTTCAGAAAAATGTTGAGGAAGCCACGTCATTGGCTGGGAAGAAATCTTCCAAGCATCAAGTAGCAAATGATTTTATTAAGTCCATAAAAGATCAGTTGAAGGAAATGACCGACAAGTTGCCAACAGATGTTCCTGACGGTAAAAGTTTGAAAATCATGCACGACCAAGCGGAAGATCTTCTAAGAAAAATTGCAGAATCTGAAACTTCTTCCTCCTTACCATCAAACCTAGAGTCTGATCAGCTAAATGCAACTACTGCTATAACTGCTTCAGATGGGGACACTGCTAAACCAAGAGAACAAAAACTGGAGGACAACGAAGATGCTGCAGGAATCGAGTCATCTCAAGATGGCGGGAAAGTTCATCAAGAAAGCAATGCATCGTCTAATTCTACTGGAGCAGCAGCAGTGCCTCCACAAAGCTCAGAATATGGTTCAGGCTCACCAAACTCTTCAAGACCTAGGAAAGAAGGAGAAACAGAAACCATTGAACAATTTGCACCCGGTGTGTACGTGACACTTATTGTGCGGCCCGGTGGTCATAAAATTTTCAAACGAGTTAGATTCAGTAAGCGAAGGTTCGATGAACAACAGGCAGAAGAATGGTGGAGCAAAAACAAAGATAAGGTGCTTAGGAAATACAGTCCATTATTAGCAACGCATTTTACAGCTACGGGCACACCACCATCACCTCTTTGTAGAGAACGTTGA 3228 0.43 MADLAGNVNIEQALIALKKGTQLIKYSRKGKPKLCPFRLSPDETILIWITHRGERNLNLSGVSHIISGQRTAVFRRYLCPEKDSLSFSLLHKNSERSLNLICKDKAEADVWFTGLKALISPGQRSRHRHTRSDFSSLQGSIDFTHDGRPFSATVEYPSSSLHGRVSIDSASRDTLLNWANSDVGLERANMQLRVGAGDNFRLSVSSAGSGLDDIESLGDVYVWGEVWSDGISSDGLGNQVPMKTDFLIPKPLESNVVLDVQQIASGVHHTALVTRQGELFTWGEECGGRLGHGIDKSFSRPRLVEFLAVTNVEFVACGEYHTCVVSTSGDLFSWGDGTHHAGLLGHGTDISHWIPKRIVGPLEGLQVLSVACGTWHSALATSNGKLFTFGDGAFGVLGHGDQESVSYPKEVQSLSGLKTIKVACGVWHTAAIVEVMGQIGSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSTLIEFNFQQVACGRTLTVALTTTGQVFTMGGTANGQLGNPLSDGKAPVMVQDKLVGEFVEEIACGEHHVAALTSRSELYTWGKGANGRLGHGDIDDRKSPTMVEGLRDRHVKSISCGSNFMSCICIHKWVSGVDQSICSGCRQAFGFTRKRHNCYHCGLVHCHSCSSKKALKAALAPTPGKPHRVCDACYAKLKTVDVGHASTFSRRTTXPRRSIDNRERIEWVDTRSSRVLLSPITEPVKYLEIRTNKPGRRSDSSSIVRASQVPSRLQLKDIAFPSSLSTIQNAFKPAVIHPSPPRTPPANSRSSSPYARRPSPPPSPAPGFSKSIIDSLRKTNEILNQEVSKLHKQIQSLRQKNETQDKEIQKLQKNVEEATSLAGKKSSKHQVANDFIKSIKDQLKEMTDKLPTDVPDGKSLKIMHDQAEDLLRKIAESETSSSLPSNLESDQLNATTAITASDGDTAKPREQKLEDNEDAAGIESSQDGGKVHQESNASSNSTGAAAVPPQSSEYGSGSPNSSRPRKEGETETIEQFAPGVYVTLIVRPGGHKIFKRVRFSKRRFDEQQAEEWWSKNKDKVLRKYSPLLATHFTATGTPPSPLCRER 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0739 1076 FunFam PH, RCC1 and FYVE domains-containing protein 1 193 437 - -
Prci4g0739 1076 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 263 273 IPR000408 -
Prci4g0739 1076 Gene3D - 7 128 IPR011993 -
Prci4g0739 1076 PRINTS Chromosome condensation regulator RCC1 signature 487 505 IPR000408 -
Prci4g0739 1076 PRINTS Chromosome condensation regulator RCC1 signature 545 566 IPR000408 -
Prci4g0739 1076 PRINTS Chromosome condensation regulator RCC1 signature 386 400 IPR000408 -
Prci4g0739 1076 PRINTS Chromosome condensation regulator RCC1 signature 329 345 IPR000408 -
Prci4g0739 1076 PRINTS Chromosome condensation regulator RCC1 signature 260 273 IPR000408 -
Prci4g0739 1076 PRINTS Chromosome condensation regulator RCC1 signature 279 295 IPR000408 -
Prci4g0739 1076 PRINTS Chromosome condensation regulator RCC1 signature 370 386 IPR000408 -
Prci4g0739 1076 MobiDBLite consensus disorder prediction 761 802 - -
Prci4g0739 1076 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 422 432 IPR000408 -
Prci4g0739 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 277 328 IPR000408 -
Prci4g0739 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 328 379 IPR000408 -
Prci4g0739 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 383 432 IPR000408 -
Prci4g0739 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 551 597 IPR000408 -
Prci4g0739 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 498 546 IPR000408 -
Prci4g0739 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 448 494 IPR000408 -
Prci4g0739 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 277 325 IPR000408 -
Prci4g0739 1076 Gene3D - 171 441 IPR009091 -
Prci4g0739 1076 CDD FYVE_like_SF 612 664 - -
Prci4g0739 1076 Pfam Transcription factor regulating root and shoot growth via Pin3 999 1054 IPR013591 -
Prci4g0739 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 446 497 IPR000408 -
Prci4g0739 1076 SUPERFAMILY RCC1/BLIP-II 217 603 IPR009091 -
Prci4g0739 1076 MobiDBLite consensus disorder prediction 958 993 - -
Prci4g0739 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 384 435 IPR000408 -
Prci4g0739 1076 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 606 677 IPR013083 -
Prci4g0739 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 550 601 IPR000408 -
Prci4g0739 1076 MobiDBLite consensus disorder prediction 935 949 - -
Prci4g0739 1076 MobiDBLite consensus disorder prediction 901 1002 - -
Prci4g0739 1076 Pfam Pleckstrin homology domain 11 119 IPR001849 -
Prci4g0739 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 329 383 IPR000408 -
Prci4g0739 1076 SMART fyve_4 600 669 IPR000306 GO:0046872
Prci4g0739 1076 SUPERFAMILY PH domain-like 10 119 - -
Prci4g0739 1076 Gene3D - 442 605 IPR009091 -
Prci4g0739 1076 Pfam FYVE zinc finger 602 668 IPR000306 GO:0046872
Prci4g0739 1076 MobiDBLite consensus disorder prediction 906 932 - -
Prci4g0739 1076 SUPERFAMILY FYVE/PHD zinc finger 602 669 IPR011011 -
Prci4g0739 1076 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 606 668 IPR017455 -
Prci4g0739 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 218 276 IPR000408 -
Prci4g0739 1076 Pfam Transcription factor BRX N-terminal domain 855 886 IPR027988 -
Prci4g0739 1076 ProSiteProfiles BRX domain profile. 1000 1055 IPR013591 -
Prci4g0739 1076 Coils Coil 803 851 - -
Prci4g0739 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 498 549 IPR000408 -
Prci4g0739 1076 CDD PH_PLC_plant-like 10 120 - -
Prci4g0739 1076 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 55 874 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0739 Prci-Chr4 4962073 4969457 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0739 997 1055 Major Intrinsic Protein MIP AT1G31880 40.678 3.20e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0739 - - qsa:O6P43_021414 1440.25