Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2781 ATGTGCATCTCGATACTAACTTCAACCCAACGCTCAATAGTCAATATAACTCTTTCTCCACCTCTTGACCTTGTCTTCACTTCGCTCCCTGAGATAGAATTGCTTCTCAGGGCTGTTGATTGGGGCAGATGCAGTCTGCTGAAGGTAGAGGAGGTGATCATGGAGGGTAGTGGGTGGAAGCCTAATATAGAGATATCACCGAACTGTCCCAGGTGTGGGTCTTGCAACACCAAGTTCTGCTACTACAATAACTACAGCTTAACTCAACCTCGCTACTTCTGCAAGGGCTGCAGAAGGTACTGGACCAAAGGAGGATCGCTCCGCAATGTTCCCGTCGGCGGTGGCTGCCGGAAGAACAGGCGTGGCAGTAAGACCTCCTTCAGACAATCATCCATGGATGCTCTTCCTCCCAAGATTTCACCTCATGATAATTGTGATCCTTCAACAAATCCATCTTCATGTGGCTCCTCGGGGCTGTCTGATGCTCCAAAAATTGATCTTGCACTTGTTTATGCGAATTTCCTCAATCAAAAGCCGGATTCACCAGCACCAAGCGTAGAAGTTGTGGGTTTGCCCCGAGATGATCAACTTGGTGTTAGTGGGTACTTGACAGAATCCCAGCTGAGTGAGAGCAACCAAATGTACCTGTGCGGGTTCAACTCTGTGCCGCAAAATCAGGCAGATCATGGAATTGATCAGCGTTGTAATAGACATGATGCTATGAATTTTGAGTTGCCACCATTGCCAGGTGAAGAGGCAGCCTTCAATGATATGATGTGGTCCAAATCTGGCCCGCACTCCTCACAGCCCCCTCTTTTTGGTGTTGATGCTCATCACGCCGACTTCTTATTGGACAATTGGAGCCCCTTCGATTTATCCAGGCCTTAG 888 0.4842 MCISILTSTQRSIVNITLSPPLDLVFTSLPEIELLLRAVDWGRCSLLKVEEVIMEGSGWKPNIEISPNCPRCGSCNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGSKTSFRQSSMDALPPKISPHDNCDPSTNPSSCGSSGLSDAPKIDLALVYANFLNQKPDSPAPSVEVVGLPRDDQLGVSGYLTESQLSESNQMYLCGFNSVPQNQADHGIDQRCNRHDAMNFELPPLPGEEAAFNDMMWSKSGPHSSQPPLFGVDAHHADFLLDNWSPFDLSRP 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2781 295 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 59 90 IPR017896 -
Prci3g2781 295 ProSiteProfiles Zinc finger Dof-type profile. 67 121 IPR003851 GO:0003677|GO:0006355
Prci3g2781 295 ProSitePatterns Zinc finger Dof-type signature. 69 105 IPR003851 GO:0003677|GO:0006355
Prci3g2781 295 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 64 224 IPR045174 GO:0003700|GO:0006355
Prci3g2781 295 MobiDBLite consensus disorder prediction 143 158 - -
Prci3g2781 295 Pfam Dof domain, zinc finger 68 121 IPR003851 GO:0003677|GO:0006355
Prci3g2781 295 MobiDBLite consensus disorder prediction 112 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2781 Prci-Chr3 39834120 39836116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2781 47 293 C2C2-Dof Transcription Factor Family AT3G52440 40.741 1.29e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Prci3g2781 zf-Dof 3.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2781 - - pcin:129306581 626.32