Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2375 ATGAGCGATCCGGGAGAAATGTCCGGGAAGGATTCCGCTATCAAGCTATTTGGCAGGAAGATTCCCCTGCCGGAATGTCACATTCCGGTGACCTCTCAAGTGGCTCCTCCTCAGATTCCGGCCAACTCCGGAACCATGGATGCTTGCAGTAGCTTAAAGAAAACAGAAGCAGAAAATGTTTGTGCAGAGAACTCTGAGCAACAAGAGAATGCCTCTGATTTACCAGCCAGTAAGAAAGGGTCTCAAGATAATCAGCTAGAAAATGAACACAAAGCCAATCCCAAGACTACGGAAGATAGAGCGGAAACTAGTAGCACAGATCAAGATAAATCATTCAAGAAACCAGACAAGATTCTTCAGTGTCCACGGTGCAACAGTCTGGACACAAAGTTTTGTTATTTCAATAACTACAATGTTAATCAGCCTCGACATTTCTGCAAGAACTGCCAAAGGTATTGGACCGCTGGTGGAACAATGAGGAATGTTCCGGTGGGTGCTGGGAGACGAAAGAACAAGCACCTAGCCTCTCAGTTTCGCCACATTATAGTGTCTTCTGATGGAATTTCAACCTCTAGGTTGGAAACCACAGACTCATGTAGTCACCAACTTATCTCGTCTCCTGAATCATCAGCTGCTTTCAGGTCTTCATTGGCAATGGATAATGGTATTGTATTGAAATTTGGTCCAGACGCCCCTCCTCTCTGCGAATCCATGGAGACAATGCTTACTATAAGAGACCAGAACAGAAAAGTTGATGCAGAAAGTAGGAAGGAGCCATCATTATGTGGATCTTCCGTAGCAAGTGGTAGCGGTACAGAACTTGTCATGCAAAAAGAGCAATGTGTTTCTAATCAGCTTAGTTCATCAAATCAAATGCAATGTTACCCTGTTCCTCCACTGTTGTTTCCCTGGAATCCAGATTGGAACAATGTTGTTTCCATGACTCCAATTCATCAATCTACGGCACCAATCCAGTGGTATCCTGCACCGTTGGTGGCAGCTCCCGCCATGTGCCCACCTGGCATTCCTTTACAATATGCACCACCATCATACTGGTCTGCTGGCACTGGGACCGTCTCTATGGGGTCTAATGGTTGTCTTTCACCATCATCGTCAACTAGTAATAGCTGCTGCTCAGGCAATGGCTCTCCAACTTTGGGAAAACACTCTAGAGATACAGTCTTCACCGATGAAGAGAAGACTGAGAAGTGTGTTCTGGTTCCCAAGACTCTTAGGATTGATGATCCAAAAGATGCCTCAAAAAGTCCAATTTGGGCTACATTAGGTATAAAACCTGACAAGAAGGAGTGTGAATTAGATGGTCGTAGATCAAAAAAGTTGGAAGCTGAAGGAGATGGAAAAGACCGTGTGTTGGGTGTCTCTCAAATTTTGGAAGCTAACCCAGCTGCTATCTCTCGTGCGCATGCATTCCAGGAGAGCTCACAATGA 1449 0.452 MSDPGEMSGKDSAIKLFGRKIPLPECHIPVTSQVAPPQIPANSGTMDACSSLKKTEAENVCAENSEQQENASDLPASKKGSQDNQLENEHKANPKTTEDRAETSSTDQDKSFKKPDKILQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQFRHIIVSSDGISTSRLETTDSCSHQLISSPESSAAFRSSLAMDNGIVLKFGPDAPPLCESMETMLTIRDQNRKVDAESRKEPSLCGSSVASGSGTELVMQKEQCVSNQLSSSNQMQCYPVPPLLFPWNPDWNNVVSMTPIHQSTAPIQWYPAPLVAAPAMCPPGIPLQYAPPSYWSAGTGTVSMGSNGCLSPSSSTSNSCCSGNGSPTLGKHSRDTVFTDEEKTEKCVLVPKTLRIDDPKDASKSPIWATLGIKPDKKECELDGRRSKKLEAEGDGKDRVLGVSQILEANPAAISRAHAFQESSQ 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2375 482 PANTHER CYCLIC DOF FACTOR 2 10 481 IPR045174 GO:0003700|GO:0006355
Prci3g2375 482 MobiDBLite consensus disorder prediction 83 114 - -
Prci3g2375 482 Pfam Dof domain, zinc finger 116 173 IPR003851 GO:0003677|GO:0006355
Prci3g2375 482 MobiDBLite consensus disorder prediction 59 82 - -
Prci3g2375 482 MobiDBLite consensus disorder prediction 59 114 - -
Prci3g2375 482 ProSiteProfiles Zinc finger Dof-type profile. 119 173 IPR003851 GO:0003677|GO:0006355
Prci3g2375 482 ProSitePatterns Zinc finger Dof-type signature. 121 157 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2375 Prci-Chr3 37098615 37101890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2375 11 481 C2C2-Dof Transcription Factor Family AT5G39660 35.701 1.62e-76 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Prci3g2375 zf-Dof 2.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2375 - - ccaj:109792807 592.808