Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1871 ATGTCGGAAGCAAAAGACCCGGCGATCAAACTCTTCGGGAAGACGATCCCGCTGCCGGAGATCCAGGCCGGATCCGTAGTCTCGGCCGGAGTTCCAGCTTCGTCTCCTGGGGATATTGTTGATGATGGTGTTGATCACGATCGTGCTTCTCCCACCAACTCATCGCGAGAGTCTAATACGAAGAGGCACGGGGAAGAGCAAGAGACCGAGAAGGACACTTTGGAAGAGAACTCGAATGAGAATACGGAGGATGAGGCCCCCACTCAATCTACAGAAGAGGTTACAAATCCAGATGCAGCCTCAAGGACAGGTGAAGAATCTATTACGCCCCCTAGTGAGAAGGAGGCTACTGCATTGAAGGCTTCAAAATCTGAAGAAGAACAGAGTGAGACAAGTAATTCACAAGAAAAGACTTTGAAAAAGCCAGACAAAATACTGCCTTGCCCCCGCTGCAATAGCATGGACACCAAGTTCTGTTACTACAATAATTACAATGTCAACCAACCCCGCCACTTCTGCAAGAACTGCCAGAGATACTGGACTGCTGGTGGGACTATGAGGAATGTGCCTGTGGGTGCTGGTCGTCGAAAGAACAAGAACTCTTCTCATTATCGCCAAATAACTGTTGCTGAAGCACTCCAGACTGCCCGAACAGACATGCCAAATGGAGTGCATCATCCTATCTTGAAGCCCAATGGCACAGTCCTTGCTTTTGGGTCTGATACGCCTTTGTGTGAGTCAATGGCATCTGTCTTGAACCTTGCTGATAAAACAATGCAGGACTGCACAAGAAATGGATTTCACAGACCCGAAGAACTAAGAATTCCTGTTCCCTATGCCAGTGGAGAGAAAGGGGATGATCATTCTAACATGTCAACACAGCCGATGGAAGATACAAGCATCAACAGGCCACAAGAACAAGTAATTCAGAACTGTCAGAGCTTCCCACCTCAAGTTCCATACTATCCTGGGGCACCGTGGCCTTTCCCATGGAATCCAGTGCAGTGGAGCTCTCCAGTACCACCTCCTGCATTTTGCCCTCCAGGCTTTACCATGCCATTCTATCCTGCAGCTGCATACTGGGGTTGTGCCGTCTCAGGTGCTTGGAACATGCCATGGCTGCCACAACCATCATCACCAAACAGTGTGGGCCCTAATTCTGGCCCTAACTCGCCAACCTTGGGTAAGCATTCAAGGGAAGAAAACATGCTCAAGATAAATGACTCGGGTGGAGAGGATGAACGAAGTAAAGAAAACGGCAAAGAGAAGTGCCTTTGGGTTCCGAAAACTTTGAGGATTGATGACCCGGGAGAAGCAGCTAAAAGCTCTATATGGACAACGCTGGGGATTAAGAATGACAAGGCCGAGTCAGTTCAAGAGGGAGGGCTCTTTAGGGCATTCCCATCAAAGGGTGATGGAAAAGAACATTCAACACAAAACTCGACAGTCTTGCAGGCCAATCCCGCGGCATTGTCTAGGTCACTCAACTTTCATGAGACCTCATAA 1506 0.4887 MSEAKDPAIKLFGKTIPLPEIQAGSVVSAGVPASSPGDIVDDGVDHDRASPTNSSRESNTKRHGEEQETEKDTLEENSNENTEDEAPTQSTEEVTNPDAASRTGEESITPPSEKEATALKASKSEEEQSETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSSHYRQITVAEALQTARTDMPNGVHHPILKPNGTVLAFGSDTPLCESMASVLNLADKTMQDCTRNGFHRPEELRIPVPYASGEKGDDHSNMSTQPMEDTSINRPQEQVIQNCQSFPPQVPYYPGAPWPFPWNPVQWSSPVPPPAFCPPGFTMPFYPAAAYWGCAVSGAWNMPWLPQPSSPNSVGPNSGPNSPTLGKHSREENMLKINDSGGEDERSKENGKEKCLWVPKTLRIDDPGEAAKSSIWTTLGIKNDKAESVQEGGLFRAFPSKGDGKEHSTQNSTVLQANPAALSRSLNFHETS 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1871 501 Pfam Dof domain, zinc finger 143 200 IPR003851 GO:0003677|GO:0006355
Prci3g1871 501 MobiDBLite consensus disorder prediction 26 146 - -
Prci3g1871 501 PANTHER CYCLIC DOF FACTOR 2 1 501 IPR045174 GO:0003700|GO:0006355
Prci3g1871 501 MobiDBLite consensus disorder prediction 379 400 - -
Prci3g1871 501 MobiDBLite consensus disorder prediction 118 144 - -
Prci3g1871 501 ProSitePatterns Zinc finger Dof-type signature. 148 184 IPR003851 GO:0003677|GO:0006355
Prci3g1871 501 MobiDBLite consensus disorder prediction 464 501 - -
Prci3g1871 501 MobiDBLite consensus disorder prediction 83 107 - -
Prci3g1871 501 ProSiteProfiles Zinc finger Dof-type profile. 146 200 IPR003851 GO:0003677|GO:0006355
Prci3g1871 501 MobiDBLite consensus disorder prediction 473 501 - -
Prci3g1871 501 MobiDBLite consensus disorder prediction 379 397 - -
Prci3g1871 501 MobiDBLite consensus disorder prediction 40 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1871 Prci-Chr3 33135270 33139236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1871 6 501 C2C2-Dof Transcription Factor Family AT5G39660 46.008 2.05e-118 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Prci3g1871 zf-Dof 3.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g1871 - - gmx:100788247 736.102