Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1320 ATGTCGCCTCGTGTCAGAGACCTACAGTTAACTTCTCTTGCTGGTAGCCGTGAAATCTCCTCCTCCGCTGATCTCGGCGACCTCGAGGATGTCCGGCTCCTGGACTCCTACGACAAAACAGATTCTTCTTATGGATCTGAAGAGGGAATCAAGAGGATTCAGGTCAGAGTCTCTGGCATGACCTGTGCTGCCTGCTCCAATGCTGTCGAAGCAGCTCTCAAGGCCATTGATGGCGTGCTCAGTGCCTCCGTGGCTCTGCTTCAGAATAAGGCTAATGTCGTTTTCAACTCAAGTCTGGTCAAGGACGAAGACATTAAAAATGCAATTGAAGATGCTGGATTTGAAGCAGACATATTACCTGAGTCCAGTACAGTTGGACCAAAACTGCAGCAAACCCTGGTTGGACAGTTCACAATTGGTGGTATGACATGTGCAGCTTGTGTAAATTCTGTTGAAGGTATTTTGAGGAATCTTACTGGGGTCAAAAGGGCTGTTGTAGCTTTGGCAACTTCCTTGGGGGAAGTTGAATATGATCCTACTATAATTAGTAAAGATGATATAATCAATTCAATGGAGGATGCTGGCTTTGAAGCTTCATTTGTACAGAGTAGTGAGCAAGATAAAATAATTTTAGGGATTGTTGGTTTGTACAGCCTGATTGATGCGCAAGTTTTGGAAGGCATTCTCAGCAGCATGAAAGGATTAAAACAGTTTCGTTTTGACCAGATATCATGCGAACTGGAAGTTCTATTTGATCCTGAAATTCTCAATTCTAGATCCTTAGTTGACGGGATTGAAGGGGGAAGCAACGGGAAGTTTAAATTACATGTTAGGAGCCCATATGCAAGAACGATATCTAAGGATGTTGAAGAGATCACAGCTATGTTTCGACTTTTTATCTCAAGTCTGCTTCTAAGTATTCCTCTCTTTCTCATTGGTGTAGTTTGTCCTCATATACCAATGTTATACTCCTTACTACTTTGGAGATGTGGGCCTTTCCTCATGGATGATTGGCTGAAGTGGGCATTAGCTACTGTTATCCAATTTGGAATTGGAAAGCGCTTCTACATTGCGGCTGGCAGAGCTCTTAGAAATGGTTCAACTAACATGGATGTGTTGGTTGCTTTGGGAACTACAGCTTCTTATGTCTATTCTGTTTGTGCTCTTCTTTACGGTGCCCTTACTGGATTCTGGTCTCCGACATATTTTGAAACAAGTGCCATGCTCATAACATTTGTATTGTTGGGGAAGTATTTGGAATGCCTTGCAAAGGGAAAGACATCAGATGCCATCAAGAAGTTAGTAGAGCTGGCTCCTGCGACAGCTTTATTGGTAGTCAAAGATAAAGGTGGTAAACCTGTTGAAGAAAGGGAAATAGATTCATTGCTCATTCAGCCTGGTGACACGTTAAAGGTTCTTCCTGGTGCAAAGATTCCTGCTGATGGCATCATTACATGGGGCTCAAGTCATGTCAATGAGAGTATGGTAACTGGTGAAGCTGCACCTGTTTCAAAGGAAGTTAATGCATCTGTTATTGGAGGTACTATAAATTTACATGGTGTCCTTCACATTCGAGCCACCAAAGTTGGAGCTGATACAGTTTTGAGTCAGATAATTAGTCTGGTAGAGACAGCCCAGATGTCCAAAGCCCCTATTCAGAAATTTGCTGATTATGTAGCAAGCATTTTTGTCCCTACAGTTGTTTCTTTTGCATTATTGACATTATTGGCTTGGTACGTTGCTGGAGCTTTAGGAGCTTACTCTGATGGGTGGCTGCCAAAAAATGGAAATCACTTTGTTTTTGCCCTTATGTTTGCAATATCTGTGGTGGTGATTGCATGTCCCTGTGCACTTGGCTTGGCAACGCCAACTGCTGTCATGGTTGCAACAGGGGTTGGGGCTAAGAATGGAGTTTTAATTAAAGGAGGAGATGCCTTGGAAAAGGCTCAGATGGTGAAGTACCTAATATTTGATAAAACAGGAACTCTAACTCAGGGAAAAGCCACTGTTACGACTGCCAAGGTATTCACAGGAATGGATCGGGGAGAGTTTCTTACATTGGTGGCTTCTGCAGAGGCTAGCAGTGAGCACCCACTGGGGAAAGCAATTGTAGAATATGCACGTCATTTTCATTTCTTTGATGGGTCATCTGCAGCCACTGGTACCCAAGATGTTGCCGAGGAGTTAAATTCTGGATGGCTTCATGATGTCTCAGACTTCTCTGCTATTCCAGGAAGGGGCATCCAGTGCCTTTCAGATGGGAAGCGTATTCTGGTTGGTAACAGGAAGCTAATGGTGGAAAGTGGCATAAATATTCCGACCCAAGTGGAAAATTTTGTAGTGGATCTGGAAGAAGGTGCTAAGACAGGAATACTTGTTGCATATGGTGACGAATTAATAGGCGTTTTAGGGGTTGCAGACCCGCTAAAAAGAGAAGCTTCTGTGGTTATAGAAGGACTCCGAAAAATGGGTGTCAGTCCTGTTATGGTTACCGGAGACAATTCGAGAACTGCTCAGGCTGTTGCCAAGGAGGTTGGAATTGAAGATGTGAGAGCAGAGGTGATGCCAGCAGGAAAGGCCGAGGTTGTTCGCTCATTTCAAAAAGACGGGAGCGTAGTGGCGATGGTGGGAGATGGAATTAATGACTCTCCGGCGTTAGCTGCTGCGGACGTAGGCATGGCGATTGGCGCCGGCACGGATATTGCAATAGAAGCTGCAGACTATGTGCTGATGAGAAACAATCTGGAAGATGTGATCACAGCCATTGATCTCTCAAGGAAGACATTTTCTCGAATTCGATTGAACTATGTATTTGCAATGGCTTACAATGTGGTTGCCATACCTGTTGCTGCTGGGGTCCTGTATCCTTCATTAGGGATCAAGCTGCCTCCTTGGGTTGCTGGTGCATGCATGGCTCTCTCATCAATAAGTGTTGTTTGCTCTTCTTTGCTTCTTAGGAGATATAGAAGACCCAGACTTACTACAATTCTTGAAATAGTTGTAGAATAA 3009 0.4407 MSPRVRDLQLTSLAGSREISSSADLGDLEDVRLLDSYDKTDSSYGSEEGIKRIQVRVSGMTCAACSNAVEAALKAIDGVLSASVALLQNKANVVFNSSLVKDEDIKNAIEDAGFEADILPESSTVGPKLQQTLVGQFTIGGMTCAACVNSVEGILRNLTGVKRAVVALATSLGEVEYDPTIISKDDIINSMEDAGFEASFVQSSEQDKIILGIVGLYSLIDAQVLEGILSSMKGLKQFRFDQISCELEVLFDPEILNSRSLVDGIEGGSNGKFKLHVRSPYARTISKDVEEITAMFRLFISSLLLSIPLFLIGVVCPHIPMLYSLLLWRCGPFLMDDWLKWALATVIQFGIGKRFYIAAGRALRNGSTNMDVLVALGTTASYVYSVCALLYGALTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLVVKDKGGKPVEEREIDSLLIQPGDTLKVLPGAKIPADGIITWGSSHVNESMVTGEAAPVSKEVNASVIGGTINLHGVLHIRATKVGADTVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVSFALLTLLAWYVAGALGAYSDGWLPKNGNHFVFALMFAISVVVIACPCALGLATPTAVMVATGVGAKNGVLIKGGDALEKAQMVKYLIFDKTGTLTQGKATVTTAKVFTGMDRGEFLTLVASAEASSEHPLGKAIVEYARHFHFFDGSSAATGTQDVAEELNSGWLHDVSDFSAIPGRGIQCLSDGKRILVGNRKLMVESGINIPTQVENFVVDLEEGAKTGILVAYGDELIGVLGVADPLKREASVVIEGLRKMGVSPVMVTGDNSRTAQAVAKEVGIEDVRAEVMPAGKAEVVRSFQKDGSVVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNNLEDVITAIDLSRKTFSRIRLNYVFAMAYNVVAIPVAAGVLYPSLGIKLPPWVAGACMALSSISVVCSSLLLRRYRRPRLTTILEIVVE 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1320 1002 ProSitePatterns Heavy-metal-associated domain. 57 87 IPR017969 GO:0046872
Prci3g1320 1002 SUPERFAMILY Calcium ATPase, transduction domain A 456 542 IPR008250 -
Prci3g1320 1002 Gene3D - 134 200 - -
Prci3g1320 1002 CDD HMA 136 199 IPR006121 GO:0046872
Prci3g1320 1002 SUPERFAMILY HMA, heavy metal-associated domain 133 204 IPR036163 GO:0046872
Prci3g1320 1002 PRINTS P-type cation-transporting ATPase superfamily signature 823 833 - -
Prci3g1320 1002 PRINTS P-type cation-transporting ATPase superfamily signature 492 506 - -
Prci3g1320 1002 PRINTS P-type cation-transporting ATPase superfamily signature 876 895 - -
Prci3g1320 1002 PRINTS P-type cation-transporting ATPase superfamily signature 656 670 - -
Prci3g1320 1002 PRINTS P-type cation-transporting ATPase superfamily signature 801 812 - -
Prci3g1320 1002 PRINTS P-type cation-transporting ATPase superfamily signature 899 911 - -
Prci3g1320 1002 SFLD Haloacid Dehalogenase 638 928 - -
Prci3g1320 1002 NCBIfam copper ion binding protein 136 198 IPR006122 GO:0005507
Prci3g1320 1002 NCBIfam copper ion binding protein 53 116 IPR006122 GO:0005507
Prci3g1320 1002 FunFam Probable copper-transporting ATPase HMA5 777 933 - -
Prci3g1320 1002 NCBIfam HAD-IC family P-type ATPase 754 957 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Prci3g1320 1002 NCBIfam HAD-IC family P-type ATPase 409 677 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Prci3g1320 1002 CDD P-type_ATPase_Cu-like 297 982 - -
Prci3g1320 1002 NCBIfam heavy metal translocating P-type ATPase 370 985 IPR027256 GO:0006812|GO:0016020|GO:0019829
Prci3g1320 1002 FunFam Copper-exporting P-type ATPase A 49 119 - -
Prci3g1320 1002 Gene3D - 623 933 IPR023214 -
Prci3g1320 1002 ProSiteProfiles Heavy-metal-associated domain profile. 133 199 IPR006121 GO:0046872
Prci3g1320 1002 FunFam Copper-transporting ATPase RAN1 663 755 - -
Prci3g1320 1002 PRINTS H+-transporting ATPase (proton pump) signature 848 864 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Prci3g1320 1002 PRINTS H+-transporting ATPase (proton pump) signature 876 892 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Prci3g1320 1002 PRINTS H+-transporting ATPase (proton pump) signature 907 932 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Prci3g1320 1002 ProSiteProfiles Heavy-metal-associated domain profile. 51 117 IPR006121 GO:0046872
Prci3g1320 1002 Gene3D - 755 807 IPR023299 GO:0000166
Prci3g1320 1002 Gene3D - 663 754 IPR023299 GO:0000166
Prci3g1320 1002 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 37 997 - -
Prci3g1320 1002 FunFam Copper-transporting ATPase 1, putative 424 546 - -
Prci3g1320 1002 SUPERFAMILY HAD-like 655 982 IPR036412 -
Prci3g1320 1002 SUPERFAMILY Calcium ATPase, transmembrane domain M 390 951 IPR023298 -
Prci3g1320 1002 SUPERFAMILY HMA, heavy metal-associated domain 48 120 IPR036163 GO:0046872
Prci3g1320 1002 Pfam E1-E2 ATPase 439 636 - -
Prci3g1320 1002 ProSitePatterns E1-E2 ATPases phosphorylation site. 658 664 IPR018303 -
Prci3g1320 1002 Gene3D - 50 121 - -
Prci3g1320 1002 ProSitePatterns Heavy-metal-associated domain. 139 168 IPR017969 GO:0046872
Prci3g1320 1002 Pfam haloacid dehalogenase-like hydrolase 652 890 - -
Prci3g1320 1002 CDD HMA 54 116 IPR006121 GO:0046872
Prci3g1320 1002 FunFam Copper-exporting P-type ATPase 756 807 - -
Prci3g1320 1002 Pfam Heavy-metal-associated domain 137 197 IPR006121 GO:0046872
Prci3g1320 1002 Pfam Heavy-metal-associated domain 55 115 IPR006121 GO:0046872
Prci3g1320 1002 Gene3D - 424 546 - -
Prci3g1320 1002 FunFam Copper-exporting P-type ATPase A 131 201 - -
Prci3g1320 1002 SFLD p-type atpase 638 928 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1320 Prci-Chr3 21212086 21218980 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g1320 3 21212086 21218980 Prci3g1320 3 21212086 21218980 ECH