Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0941 ATGGGTTTGAGTTCTAAGCAGGTAATTTCTAGAAGTGGGATTGACTGGAACCAGACGTTGCTGCAAGATCAGAAGTTGGAGCTTCCAAAGCCTCCATTGATGAGGAAACTGCAACAGCAGCAGCAGCAGATGCAACAACAACAACAGAGACAACAATCTCAGCAATCATCGGAGCCATTGAAGTGTCCGAGGTGTGATTCGACGAACACCAAGTTCTGTTACTACAACAACTACAACAAGTCTCAGCCTCGCCATTTCTGCAGAACCTGCAAGAGGCACTGGACTAAAGGTGGCACCTTGCGCAATGTCCCCGTCGGTGGCGGCAGGAAAAACAAACGGCTCAAGAAATCATCCAACCCCATCTCTTCCTCCGCGGCCGCCGCCGCCTCCACAACCTCCGGTAGTGGTGGGTTGAATACCCACATGACAATTCAGAGTTCCCTGCAAAGGCCGAGTAATAATCTTCCTCTTCCTCCGTCCTCTGCTTCTCTCTTTCAGTCTCTGATTCATCCTCCTCCAACTCCATCCTTACTGCCTCATCCGAATCTGATGAGCCCAAGAGACTCACAGAGTAAAGATTTTGGAATCAGTAATTGTACGAGCAGCTTCTTGAGTTCGAGTCTGCAGCCTCTTGTTACTCAAAATCAGAGCTTTATTTTCCCTTTCTCGAGCTCGAGCTCATTTGAGACTAAGCCATCATGTTCTGTTTCAACCTCTCTGAGATCCTCCAATGTCTACAGTAATACTAATAACTACGGCGGAGAGTTGAAGACAATGGAGGAGCCAACCCCAAAACAGACACAGCCATGGGAGATACCTTCGACAAGCGTAGGCAATACGGAAATGTCAAGCTATTGGACTTGGGAGGACCTCGATTCCTTGGTCTCAACTGATCTCAATGTTCCCTGGGATGATTCTGATTTAAAACCCTGA 933 0.4802 MGLSSKQVISRSGIDWNQTLLQDQKLELPKPPLMRKLQQQQQQMQQQQQRQQSQQSSEPLKCPRCDSTNTKFCYYNNYNKSQPRHFCRTCKRHWTKGGTLRNVPVGGGRKNKRLKKSSNPISSSAAAAASTTSGSGGLNTHMTIQSSLQRPSNNLPLPPSSASLFQSLIHPPPTPSLLPHPNLMSPRDSQSKDFGISNCTSSFLSSSLQPLVTQNQSFIFPFSSSSSFETKPSCSVSTSLRSSNVYSNTNNYGGELKTMEEPTPKQTQPWEIPSTSVGNTEMSSYWTWEDLDSLVSTDLNVPWDDSDLKP 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0941 310 Pfam Dof domain, zinc finger 59 112 IPR003851 GO:0003677|GO:0006355
Prci3g0941 310 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 39 259 IPR045174 GO:0003700|GO:0006355
Prci3g0941 310 MobiDBLite consensus disorder prediction 172 191 - -
Prci3g0941 310 ProSitePatterns Zinc finger Dof-type signature. 62 98 IPR003851 GO:0003677|GO:0006355
Prci3g0941 310 ProSiteProfiles Zinc finger Dof-type profile. 60 114 IPR003851 GO:0003677|GO:0006355
Prci3g0941 310 Coils Coil 34 57 - -
Prci3g0941 310 MobiDBLite consensus disorder prediction 117 141 - -
Prci3g0941 310 MobiDBLite consensus disorder prediction 98 141 - -
Prci3g0941 310 MobiDBLite consensus disorder prediction 23 62 - -
Prci3g0941 310 MobiDBLite consensus disorder prediction 251 277 - -
Prci3g0941 310 MobiDBLite consensus disorder prediction 35 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0941 Prci-Chr3 12237369 12239395 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0941 39 169 C2C2-Dof Transcription Factor Family AT1G51700 42.336 1.16e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Prci3g0941 zf-Dof 1.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0941 - - gmx:778119 302.367