Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1558 ATGGACACAGCTCAGTGGGCACAGGGGAATATTGGAGTGGTTAAGCCTATGGAATTAGGTTCAACTCCAAAGCCTCCTATGTTGGAGAAAAAGGCAAGGCCTCAGAAAGATCAAGCTTTGAACTGTCCAAGGTGCAATTCAACCAACACCAAATTCTGCTACTACAACAACTATAGCCTCTCTCAACCCAGATACTTCTGCAAGACTTGTAGAAGGTATTGGACTGAAGGTGGCTCTCTCAGGAATGTTCCTGTGGGTGGAGGTTCCAGAAAAAACAAGAGACCTTCTTCTTCTTCCTCTGCTTCCTCAACATCAACAGCATCCAAGAAGCTTCCAGAACCTTCCCCTCAGAACCCCAGCAACAAGATCCACCAGGCCCAGGATCTTAACTTGGCTTACCCAACACCACCATCACTGCCTCCTCCACAACCTGACATTTCTGGCACTTCTAATTCTTCGAGGGGTTTGATGAATTCCTTGATGCCCATGTCGGTTTCATCAGATGGAAGCATGATGTATAACAGTAATAGTAATTCAGCTCATCATCATGGGTTTCCTTTCGAGTTCAAGCCCCATCATCATCAAGGGCTTAATTTTAGCTTCGAGGGGTTTGAGAATAATGGGTTTGGAAGTGGTCTTCATCATCATCAGGGAATGCAATTGGGTAATTCTGCTGGTGGTGCAAGGATCTTGTTTCCTATTGAAGATTTGAAGCACGTGCCAAGCACTGCAACCAGTCATGAGTTTGATCAGCAAAATAATAGAGCTGGAAGCCATGGAGATCCAAGTGGGTTTTGGAATGGCATGTTAGGTGGAGGAGCGTGGTAG 828 0.4577 MDTAQWAQGNIGVVKPMELGSTPKPPMLEKKARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRPSSSSSASSTSTASKKLPEPSPQNPSNKIHQAQDLNLAYPTPPSLPPPQPDISGTSNSSRGLMNSLMPMSVSSDGSMMYNSNSNSAHHHGFPFEFKPHHHQGLNFSFEGFENNGFGSGLHHHQGMQLGNSAGGARILFPIEDLKHVPSTATSHEFDQQNNRAGSHGDPSGFWNGMLGGGAW 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1558 275 MobiDBLite consensus disorder prediction 145 163 - -
Prci2g1558 275 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 29 199 IPR045174 GO:0003700|GO:0006355
Prci2g1558 275 MobiDBLite consensus disorder prediction 91 132 - -
Prci2g1558 275 MobiDBLite consensus disorder prediction 250 275 - -
Prci2g1558 275 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Prci2g1558 275 MobiDBLite consensus disorder prediction 78 163 - -
Prci2g1558 275 Pfam Dof domain, zinc finger 37 94 IPR003851 GO:0003677|GO:0006355
Prci2g1558 275 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Prci2g1558 275 MobiDBLite consensus disorder prediction 15 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1558 Prci-Chr2 11593483 11595930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1558 1 275 C2C2-Dof Transcription Factor Family AT4G24060 39.826 1.48e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Prci2g1558 zf-Dof 1.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1558 - - pcin:129300981 544.658