Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1436 ATGTTGGGTTCTGAATTCTCAGCCGGGTGTGATGCCAGTCCCAAGCCATTGCCCAGTTGGAAACCCAGCCACGTGGAGCCGTCTCCCCCCTGCCCTCGCTGTGCTTCTTCCAACACCAAGTTCTGTTACTACAACAACTACAGCTTATCCCAGCCTCGCTACCTGTGTAAATCTTGCCGTCGCTACTGGACCAAAGGCGGTTTCCTCCGCAACGTCCCCATCGGCGGCGCTGCCCGTAAATCCCGCCGTACTAAGGCCCCTAGCCTCCCGCCAAACCACCGTCTTTCCAGTTCCACCAACCTTACTCCTAACTCCGCCAAAGACTCCGAGGCTCATGATCCGTCCCAAGCCAATGGGTCGCACATCGACATGGCCCTCGTCTTCGCCAACTACTTGAGCTCCGGTCATGATTCTAATGCCGACAACGATGCTCCTCAGCCGTCCGATCCCGTCACGGATGTGGTGCCAGAGGGAGAGAGGCTTCTTCCTCGGGACGAGTCGGTGACGAGTGGAATTGAGCCGGAGTGGGAAAGCTTGTTAGGTGGCGGCGGTGGACAAGTGGTCCACGATGTTTTCTGCTTGTCTGATGCTACGACGTCGTCCTCGTCCGTCACCTGGCAGCCGCCTCTGATGCAGTTGCAGGAGGAATTGGAGAATCCCTTGCCCTTCAATTATGACGAGGATGCTCTTTCTCAATTGCCCATCGCCGATTCCTGGAACTGGAATTCCTTCGATTTTTCGACTTTGCAGCTTTATTTTCTGGACCCAAAACCTAAGTGA 780 0.5564 MLGSEFSAGCDASPKPLPSWKPSHVEPSPPCPRCASSNTKFCYYNNYSLSQPRYLCKSCRRYWTKGGFLRNVPIGGAARKSRRTKAPSLPPNHRLSSSTNLTPNSAKDSEAHDPSQANGSHIDMALVFANYLSSGHDSNADNDAPQPSDPVTDVVPEGERLLPRDESVTSGIEPEWESLLGGGGGQVVHDVFCLSDATTSSSSVTWQPPLMQLQEELENPLPFNYDEDALSQLPIADSWNWNSFDFSTLQLYFLDPKPK 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1436 259 Pfam Dof domain, zinc finger 29 83 IPR003851 GO:0003677|GO:0006355
Prci2g1436 259 ProSiteProfiles Zinc finger Dof-type profile. 29 83 IPR003851 GO:0003677|GO:0006355
Prci2g1436 259 MobiDBLite consensus disorder prediction 90 116 - -
Prci2g1436 259 MobiDBLite consensus disorder prediction 1 23 - -
Prci2g1436 259 MobiDBLite consensus disorder prediction 135 155 - -
Prci2g1436 259 MobiDBLite consensus disorder prediction 75 118 - -
Prci2g1436 259 ProSitePatterns Zinc finger Dof-type signature. 31 67 IPR003851 GO:0003677|GO:0006355
Prci2g1436 259 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 25 160 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1436 Prci-Chr2 10706738 10709156 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1436 20 179 C2C2-Dof Transcription Factor Family AT1G21340 43.713 1.22e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Prci2g1436 zf-Dof 4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1436 - - pcin:129303730 532.332