Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1372 ATGGCTCTGTTGTTGGACAATTGTGAGAGCATTTTACTGTCTCTGGACTCGCACAAATCGGTGCCTGCTCCTTTCCTGACCAAGACTTATCAACTGGTGGATGATCCCACCACCGATCACATTGTGTCTTGGGGCGAAGACGACACCACCTTCGTCGTCTGGCGTCCTCCCGAGTTCGCCAGGGATCTTCTCCCCAACTACTTCAAGCACAACAATTTCTCCAGCTTCGTTCGCCAGCTCAACACCTATGGTTTTAGGAAGATCGTTCCTGACAGGTGGGAGTTCGCAAATGAGTTTTTCAGGAAGGGAGAGAAGCATTTACTCTGCGAGATCCATAGAAGAAAGACGTCTCAGTTTCACCAGCAGGGATCCGTCAATCATCCTCATCATCACCCGCTGCCGTTGGGACTCAATGTTCCTACTTTCTTTCCCTTCTCGACCGCCAGAATCAGCGTCTCTCCGTCCAACGACTCCGATGACCAACCGCCCCATTGGTGTGACTCGCCGCCGCTGACTTCTCCGAGCGGAGGCTCCGGCATGGTAACGCTATCCGAGGACAACGAAAGACTGAGGCGAAGCAACAACATGCTCATGTCTGAGCTGGCCCACATGAAAAAACTCTATAACGACATCATATATTTCGTCCAGAATCATGTCAAGCCTGTGGCTCCCAGCAATTCTTTCTCTTCTTCCTTGCTCCTACCGAATACTTGTTCACCATCACCGCCCTCTCCTATGTTGCCTCCATCTGCTACAAATGTTTCCTTGGTGCAAAGGCCGATGAACCAGCTTCTGGGGTATTATTCAACTTCTGCTAACCCTAAGCAAACTACCCCTCAAGTTTCCCGTATCGTGAGACCTCCCACGACCTACACATCAAAAAGCTCCGTCGCCATTGTTGAAGAACCCTGCAGCAATACCAAGCTTTTTGGCGTGTCCATTCAGTCCAAGAAAAGGAGGCACCCTGACTCTGATTCTCTTACTCCTACCAACTCTGAAATGAACAAGGCTCGATTGGTCTTGGAACAAGATGACCTGGCCTTGAATCTCATGCCGCCTTCCGCATGTTAG 1071 0.5042 MALLLDNCESILLSLDSHKSVPAPFLTKTYQLVDDPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFRKGEKHLLCEIHRRKTSQFHQQGSVNHPHHHPLPLGLNVPTFFPFSTARISVSPSNDSDDQPPHWCDSPPLTSPSGGSGMVTLSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNSFSSSLLLPNTCSPSPPSPMLPPSATNVSLVQRPMNQLLGYYSTSANPKQTTPQVSRIVRPPTTYTSKSSVAIVEEPCSNTKLFGVSIQSKKRRHPDSDSLTPTNSEMNKARLVLEQDDLALNLMPPSAC 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1372 356 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci2g1372 356 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci2g1372 356 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci2g1372 356 FunFam Heat stress transcription factor B-4 17 115 - -
Prci2g1372 356 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci2g1372 356 Gene3D - 17 116 IPR036388 -
Prci2g1372 356 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci2g1372 356 MobiDBLite consensus disorder prediction 152 178 - -
Prci2g1372 356 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 264 IPR027725 -
Prci2g1372 356 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci2g1372 356 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Prci2g1372 356 MobiDBLite consensus disorder prediction 314 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1372 Prci-Chr2 10388694 10390354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1372 1 354 HSF AT1G46264 53.646 3.95e-116 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Prci2g1372 HSF_DNA-bind 3.6e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1372 2 10388694 10390354 Prci8g0260 8 1662234 1663826 CCT
Prci2g1372 2 10388694 10390354 Prci2g1372 2 10388694 10390354 ECH