Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1365 ATGCAAGGTCAGAGGGGTGCAATTGGTTCCTTGCCTGAAACCTTAGAATTCAACTGTGGATCCACATCTAGTAATCCTACTGTGGATCAGCAAATTTGCTGGAATAATATGCGGAATCCTGCTGATAATGATAGTGATATACCTGAGTATTTACTTCCTTTGAGTGATATGGACCCGCCATATATGAATTCGATAAACCATGAATGGCAGAATTCAAGTGGATGGAGCTTAGGTGAGCCAAGTTCTAGCAATACCCAGAGTGAAACCAACAATAACCAGCAGAAAAGAGAACTTGAATGGACATCTCCAATTAGTGCTGGTCCTGTAGCTGGTCCAAGTGCAGAAGGAAGGCACTTTGAACCAACCATTATTCTTTCGGCTGACAATGTCAATTCCAGTCCTATGTATATGCATAGCTCCAATTCTCACGTGTCAAATCTCAATTTAAATGCTGGCTTGTCAGATGGTGGTGGTGATAATAGCCAGTGTTTGGAGCATCCTAACTTGCACAAATCTAGTGGATCAGTAAATGAGCGTGTTCCACCTAGCATTGTTACCGGTCCTTTTCCTCCTCCTCCTGGAAATAACAGCTTCGTGCTAGAAGGCACTGATGTTAGGTCAGGCTGTTCTCTAGATGTGCGCCGTGCTTCTTGTAAAAGAAAGGCCATTGAAGAAAATGTTGGACCATCTTTTGACAGTGGAAGTTCTAGTTCTAGTCAGCATACAGAAAGCAGTTCATGGAACACTCTTCCAACTCAGGATAATGCTGGGAGCAGTTTAAGTAGATCTGCTTCATCTGAGCAGGCAATTGCTAGACTTGGGCTGGGAATGGGGGATGAAGCCCCTGAAAACCTTCCAGATTCAAATGATGAAGGGGGCACAGAGGGCTTCTGCAGGAATCTCCGTTTGAGGATAAGTCCTTCAAGCCAACAAGATTCAATTCCTCCCCCTGCAGTCTCTACTGGGAGTGTGATTAGGCATTCTAGTATGTCAACCTCTTCAATGTCACAAAGGTTTCGGCCTGTTGATAACTCCCTGGACTTGAGGGCAGCACCAATGGTAGATAACGTAACTCCACAAAGCCAGCCCCTTGTGATCCATGTTCCTGCTTTACCAAGGAATATGCAATCATTAAGATGGAATGGTAGTTCTAGCTCAAGAAACAGCCAATCATCAAGCCCAATCCTTTGTGCAGATAGGGATAACCAGCCACGGGAAGAATCTAGCTCAAGAAGTATTTCTAGAAACATTTTTGATCGTCCAGTATTTGTACCAGCCACTGATTTAAGAAATCTTGTTCGAAATCCAACAATTAGAGCTTCAGGTAGTGCAAATTTAAGCATGTCAGGAAATGTTGCTTCTTCTTCACGGGCAGGATCAAATTCAGCTATCAACCAGTCATCTGCCTCAACATGGGTTTCTCGTCCTAATCCTCCACAGTATCCACGTAGATTATCCGAATATGTTCGTCGATCATTGTTTTCTCCTCCTTCTGAGGCTGCTGGAAGTCAAAATCTAAGCAATAATTTTTCTTCTCTGCGTTCTGGTCCTTCTGCATCATCTGAAGCAAGGGTGCCAACATCTGGGGCTGGTGGCCAAGGACTTCATCAATCACATCCGAGATCTATGTGGATGGAGAGGCAAGGTGATGCAGAATTTGGAATTCCTTATTCTTTGCGAAGTTTGGCTGCTGCTGGTGAAGGAAGTAGTAGTAGACTTGTATCTGATCTGCGTAATGTTTTGGGCCTCATGCGAAGGGGTGGAGGTCTGCGATTGGAGGATGTTATGATTCTTGACCAATCAGTCTTTTCTGGAATGGCTGATATTCATGATCGACACAGGGATATGCGTCTTGATGTTGATAACATGTCTTACGAAGAATTGTTGGCTCTGGAAGAGCGAATTGGAAATGTTAGTACGGGATTGAGCGAAGAAACTGTAGTGAAACTTTTGAAACAGAAGAAGTATTCAGTTGAAGGAGGATCTCAGCTTGAGGCAGAACCGTGCTGTGTCTGTCAGGAGGAGTATGATGACGGAGATGATATTGGAACCCTTGATTGCGGGCACGATTACCACACAGACTGTATCAAACAGTGGCTAATGCATAAGAACCTGTGTCCCATTTGCAAGACAACGGGCTTGGCATCGTGA 2151 0.443 MQGQRGAIGSLPETLEFNCGSTSSNPTVDQQICWNNMRNPADNDSDIPEYLLPLSDMDPPYMNSINHEWQNSSGWSLGEPSSSNTQSETNNNQQKRELEWTSPISAGPVAGPSAEGRHFEPTIILSADNVNSSPMYMHSSNSHVSNLNLNAGLSDGGGDNSQCLEHPNLHKSSGSVNERVPPSIVTGPFPPPPGNNSFVLEGTDVRSGCSLDVRRASCKRKAIEENVGPSFDSGSSSSSQHTESSSWNTLPTQDNAGSSLSRSASSEQAIARLGLGMGDEAPENLPDSNDEGGTEGFCRNLRLRISPSSQQDSIPPPAVSTGSVIRHSSMSTSSMSQRFRPVDNSLDLRAAPMVDNVTPQSQPLVIHVPALPRNMQSLRWNGSSSSRNSQSSSPILCADRDNQPREESSSRSISRNIFDRPVFVPATDLRNLVRNPTIRASGSANLSMSGNVASSSRAGSNSAINQSSASTWVSRPNPPQYPRRLSEYVRRSLFSPPSEAAGSQNLSNNFSSLRSGPSASSEARVPTSGAGGQGLHQSHPRSMWMERQGDAEFGIPYSLRSLAAAGEGSSSRLVSDLRNVLGLMRRGGGLRLEDVMILDQSVFSGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETVVKLLKQKKYSVEGGSQLEAEPCCVCQEEYDDGDDIGTLDCGHDYHTDCIKQWLMHKNLCPICKTTGLAS 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1365 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 632 713 IPR013083 -
Prci2g1365 716 FunFam E3 ubiquitin-protein ligase MBR2 637 714 - -
Prci2g1365 716 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 214 714 IPR045191 GO:0061630
Prci2g1365 716 MobiDBLite consensus disorder prediction 303 339 - -
Prci2g1365 716 MobiDBLite consensus disorder prediction 72 100 - -
Prci2g1365 716 MobiDBLite consensus disorder prediction 441 480 - -
Prci2g1365 716 MobiDBLite consensus disorder prediction 226 339 - -
Prci2g1365 716 MobiDBLite consensus disorder prediction 377 413 - -
Prci2g1365 716 MobiDBLite consensus disorder prediction 497 535 - -
Prci2g1365 716 MobiDBLite consensus disorder prediction 229 268 - -
Prci2g1365 716 SUPERFAMILY RING/U-box 660 712 - -
Prci2g1365 716 MobiDBLite consensus disorder prediction 441 477 - -
Prci2g1365 716 MobiDBLite consensus disorder prediction 377 398 - -
Prci2g1365 716 Pfam Ring finger domain 669 710 IPR001841 -
Prci2g1365 716 SMART ring_2 669 709 IPR001841 -
Prci2g1365 716 MobiDBLite consensus disorder prediction 496 539 - -
Prci2g1365 716 ProSiteProfiles Zinc finger RING-type profile. 669 710 IPR001841 -
Prci2g1365 716 MobiDBLite consensus disorder prediction 72 103 - -
Prci2g1365 716 MobiDBLite consensus disorder prediction 158 181 - -
Prci2g1365 716 MobiDBLite consensus disorder prediction 165 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1365 Prci-Chr2 10329369 10335426 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1365 216 716 C3H Transcription Factor Family AT2G15530 38.654 1.17e-84 280
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1365 2 10329369 10335426 Prci8g0255 8 1610590 1616358 CCT
Prci2g1365 2 10329369 10335426 Prci2g1365 2 10329369 10335426 ECH