Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1338 ATGGCTTCCCTCAAGAAAGACGTTGATCGTATTAAAGGCCCGTGGAGTCCCGAGGAAGATGAAGCCTTGCAGAGACTCGTTCAGAGTTACGGTCCTAGAAACTGGTCTCTAATCAGCAAGTCCATTCCCGGTCGATCCGGCAAGTCCTGCCGTTTGCGGTGGTGCAATCAGCTCTCTCCCAACGTCGAGCACCGGCCTTTCACGCCCGAGGAGGACGATACTATCATGAGAGCGCACGCCAGGTTCGGCAACAAGTGGGCCACAATCGCTCGCTTGCTCCACGGTCGCACCGACAACGCCATCAAAAACCACTGGAATTCCACTCTCAAGAGGAAATGCTCCGCCATCTCCGATCCTTTCAATCCCGAATCCAATGACCACCAACCTCTCAAAAGATCTGCCAGTGTCGGTGCCGCCCCATCCGTCTCCGGATTTTACTTGAGCCCGAGTAGCCCCTCCGGATCCGATTTGAGCGATACCAGTTTGCCCGCTATGTCTCCCACGCGGGTTTGCAGACCCTTTGCGAGGAACGTTGCCCCCGTCCCCTGCGTCCAACAACCAGAAACCGCCCCTTCCGCCCCCGATCCACCTACATCACTATGCCTATCGCTGCCTGGATCCAATTCGCACGAGGTCTCCAACCATGGATCCGGATCAAATCAGCCTATCAGCTCGACCCAGTTACCACCAAGTCCACCATCGCCAGCACCTACCGTACTATCTGTAGGAGCATCAATACAGCAAGTGCGTTTTCCAGCTCCCACCAGTCAGAGCCAGAGATGTGTTCAGTTTGGTTGGGAGAAACAATTCTTCAGCGCCGAGTTTTTGGCGGCGATGCAAGAGATGATAAAGAAGGAGGTGAAGAATTACATGTCTGGAATAGAGCCGAATGGTCCTTGTATACAGACGGAAGCCATTAGAAACGCTGTGGTGAAGAGCATTGGAATGGGCAGGGCCGAGTAA 963 0.5431 MASLKKDVDRIKGPWSPEEDEALQRLVQSYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPNVEHRPFTPEEDDTIMRAHARFGNKWATIARLLHGRTDNAIKNHWNSTLKRKCSAISDPFNPESNDHQPLKRSASVGAAPSVSGFYLSPSSPSGSDLSDTSLPAMSPTRVCRPFARNVAPVPCVQQPETAPSAPDPPTSLCLSLPGSNSHEVSNHGSGSNQPISSTQLPPSPPSPAPTVLSVGASIQQVRFPAPTSQSQRCVQFGWEKQFFSAEFLAAMQEMIKKEVKNYMSGIEPNGPCIQTEAIRNAVVKSIGMGRAE 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1338 320 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Prci2g1338 320 Gene3D - 65 135 - -
Prci2g1338 320 MobiDBLite consensus disorder prediction 116 131 - -
Prci2g1338 320 MobiDBLite consensus disorder prediction 186 239 - -
Prci2g1338 320 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Prci2g1338 320 PANTHER MYB PROTEIN-RELATED 12 207 - -
Prci2g1338 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Prci2g1338 320 Pfam Myb-like DNA-binding domain 15 73 - -
Prci2g1338 320 CDD SANT 14 56 IPR001005 -
Prci2g1338 320 MobiDBLite consensus disorder prediction 116 135 - -
Prci2g1338 320 FunFam Transcription factor MYB44 66 112 - -
Prci2g1338 320 FunFam MYB transcription factor 12 63 - -
Prci2g1338 320 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Prci2g1338 320 Gene3D - 11 63 - -
Prci2g1338 320 MobiDBLite consensus disorder prediction 201 225 - -
Prci2g1338 320 SMART sant 63 111 IPR001005 -
Prci2g1338 320 SMART sant 11 60 IPR001005 -
Prci2g1338 320 CDD SANT 66 109 IPR001005 -
Prci2g1338 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1338 Prci-Chr2 10104127 10105859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1338 9 320 MYB Transcription Factor Family AT5G67300 51.553 1.68e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci2g1338 Myb_DNA-bind_6 1.6e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1338 2 10104127 10105859 Prci5g0245 5 3414898 3416385 ECH
Prci2g1338 2 10104127 10105859 Prci2g1338 2 10104127 10105859 ECH