Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1319 ATGGCTCTGGAAGCTGTCAAGTCACCCACCGCCGCTACTCCCCCCTTCCCTTTCGAATTGGACTCTAATCTTCATTCCTTGGAATCGTGGACTAAGCGCAAGCGTTCCAGGCGTCCTCGTCTTGACCATCCTTCCTCATGCAGCACGGAGGAAGAGTATCTCGCTCTCTGCCTCATCATGCTGGCTCGCAGCGGCCCCGCCGTCTCCCCCACCAATCCCACCTCATCCGACCGTCATAGCTCCCCTCAGGATAATCTTCCTCCTGCTGTATCCGGATCGGCACCGCTGTCCGCACCAGATCCAACCCCCGCCCCCAAGCTTAGTTACAAATGCTCTGTTTGCGACAGAGCTTTCTCCTCTTACCAGGCTCTTGGAGGACACAAGGCCAGTCACAGAAAACTCACTGCGGGCGGCGGTCATGGGGAAGATCAGTCCACCTCCTCCGCCGTCACGAGTACATCTGCAAACACCACGGCAACTGCATCCAACCCAGGGGGCAAGTCCCATGAATGTTCTATATGCCACAAGTCCTTCCCCACCGGACAGGCCCTCGGAGGTCACAAGCGATGTCACTACGACGGCGGTGCTGCTGCCGCTGGCGGCGGTAGCAGCGCTGTCACTGCCTCGGAAGGAGTGGGATCCACCCATACCGTTAGCCACAGCCAACGTGACTTCGACCTGAACCTTCCCGCTTTGCCTGACTTTTCGGCCAGGTTCTTCTCGCCCGGGGACGACGAAGTGGAGAGCCCTCTGCCAGTTAAAAAGCCGCGTCTTTTGGTGGCACCCAAAATTGAAGAAGATCACTGA 807 0.5812 MALEAVKSPTAATPPFPFELDSNLHSLESWTKRKRSRRPRLDHPSSCSTEEEYLALCLIMLARSGPAVSPTNPTSSDRHSSPQDNLPPAVSGSAPLSAPDPTPAPKLSYKCSVCDRAFSSYQALGGHKASHRKLTAGGGHGEDQSTSSAVTSTSANTTATASNPGGKSHECSICHKSFPTGQALGGHKRCHYDGGAAAAGGGSSAVTASEGVGSTHTVSHSQRDFDLNLPALPDFSARFFSPGDDEVESPLPVKKPRLLVAPKIEEDH 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1319 268 MobiDBLite consensus disorder prediction 29 48 - -
Prci2g1319 268 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 131 IPR013087 -
Prci2g1319 268 ProSitePatterns Zinc finger C2H2 type domain signature. 111 131 IPR013087 -
Prci2g1319 268 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 33 233 IPR044653 GO:0003700
Prci2g1319 268 SMART c2h2final6 169 191 IPR013087 -
Prci2g1319 268 SMART c2h2final6 109 131 IPR013087 -
Prci2g1319 268 MobiDBLite consensus disorder prediction 66 102 - -
Prci2g1319 268 SUPERFAMILY beta-beta-alpha zinc fingers 109 191 IPR036236 -
Prci2g1319 268 MobiDBLite consensus disorder prediction 1 21 - -
Prci2g1319 268 Pfam C2H2-type zinc finger 169 193 - -
Prci2g1319 268 Pfam C2H2-type zinc finger 109 133 - -
Prci2g1319 268 Gene3D Classic Zinc Finger 107 191 - -
Prci2g1319 268 MobiDBLite consensus disorder prediction 125 169 - -
Prci2g1319 268 MobiDBLite consensus disorder prediction 140 167 - -
Prci2g1319 268 ProSitePatterns Zinc finger C2H2 type domain signature. 171 191 IPR013087 -
Prci2g1319 268 MobiDBLite consensus disorder prediction 67 90 - -
Prci2g1319 268 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 191 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1319 Prci-Chr2 9929314 9930476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1319 1 265 C2H2 Transcription Factor Family AT1G27730 50.558 3.02e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci2g1319 zf-C2H2_6 1.7e-12 CL0361