Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1317 ATGGAGCCACTTGGAGTCATCCCTGATGGGGAAATGAGTTGCTTTCAAGGGATGTTTGCCTCAGAAGAGCATGATTACTTCTCACAGTTTCTTGGCCAAGGCTCACTTCCGCTTGGGGAACATGATCGAATGCTCATGGGAACAGAATCCATGTTTTGCTCTGCTCCTGAAGCTGGGGAAAATGGATGCATGTTTAATTCTTTAGATGCTCTCAACCCAGGTTTGCAGTTTATTTCTCAAGAAAGTAGTTTTAGCGGTGACTGTAGCGGCGACGCTTTCTACGTTGCCAACCACGGTCATTTGAACTATGTCAGTGATCCTGATCAGGCTCTAGCAAATGATGCCCGCATGTTCATGAATGTTTGCATGATGCATGAGAAAAACACTGGCACGTTCAACCCGTCACCAGGAAACGTTTTGGTGGAAGAAACTGTTAGCTACAATGAAGGTAGGAGAGGGAACAGATTGGAGAATTCTAATCTAAGTCAAGCTGAGTTTACAGCTTTTGCTTCCGAGCAGATGCACCTCAAAAGGAAGTTTGATATGCTAGAACTGGAGGGTTCAGCAGATGACAAAACAAACACCAACTCATCTGAGAATCAAAAGAAGAAACCTCGTGTTTCAAGAGACGTGCAAAAGAGTAAGAAAAATGCACAGCAAAAGAACCGAAAGGTTGCAGGAAATGGCCACGCGGCAGAAGATACTGATGCAGGATTACATGGGCAGTGCTGCAGTAGTTACAGCGTAGAGGACGATAATGCTTCTCAGGAAAATAGTGCAGGAGCTTCCTCAGAGTCTAAATCACCAGTGACTCACAACACAAATGGAAAGACCAGATCCAATAGGGGATCAGCAACAGATCCCCAGAGCCTTTATGCCAGGAGAAGAAGGGAGAGAATAAATGAACGACTGAGAATCCTACAGAATCTTGTTCCAAACGGAACAAAGGTTGATATAAGCACGATGCTTGAAGAGGCAGTCCATTACGTGAAATTTTTGCAACTCCAGATAAAGCTTCTAAGTTCTGATGACCTGTGGATGTACGCTCCTATTGCTTATAATGGGGTTGACATTGGACTGAATCTCAGCCGCGGGATTTCTCCACCAACACGATGA 1116 0.448 MEPLGVIPDGEMSCFQGMFASEEHDYFSQFLGQGSLPLGEHDRMLMGTESMFCSAPEAGENGCMFNSLDALNPGLQFISQESSFSGDCSGDAFYVANHGHLNYVSDPDQALANDARMFMNVCMMHEKNTGTFNPSPGNVLVEETVSYNEGRRGNRLENSNLSQAEFTAFASEQMHLKRKFDMLELEGSADDKTNTNSSENQKKKPRVSRDVQKSKKNAQQKNRKVAGNGHAAEDTDAGLHGQCCSSYSVEDDNASQENSAGASSESKSPVTHNTNGKTRSNRGSATDPQSLYARRRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPIAYNGVDIGLNLSRGISPPTR 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1317 371 MobiDBLite consensus disorder prediction 246 288 - -
Prci2g1317 371 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 281 349 IPR036638 GO:0046983
Prci2g1317 371 Gene3D - 286 342 IPR036638 GO:0046983
Prci2g1317 371 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 116 342 IPR045843 GO:0003700|GO:0006355
Prci2g1317 371 FunFam Basic helix-loop-helix transcription factor 285 342 - -
Prci2g1317 371 MobiDBLite consensus disorder prediction 196 217 - -
Prci2g1317 371 Pfam Helix-loop-helix DNA-binding domain 294 334 IPR011598 GO:0046983
Prci2g1317 371 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 284 333 IPR011598 GO:0046983
Prci2g1317 371 MobiDBLite consensus disorder prediction 187 292 - -
Prci2g1317 371 SMART finulus 290 339 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1317 Prci-Chr2 9895158 9898639 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1317 250 364 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 74.576 2.64e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci2g1317 HLH 1.1e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1317 2 9895158 9898639 Prci2g1317 2 9895158 9898639 ECH