Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1312 ATGCTATCGAACCTTACCGAAGAGCTTTCCATCGCGTCCTCAAGCCAATCACCAATCGCCGTTCATAGTTCATCGCAGAGGAGACTGATGGGGACGGAGAGCCCGGTGAATTTCACTTACATGGGAAGGAGTGTCAGTGAATCGAGTATCGATGATCATTCCTCTTCGGCTTTCAGCGATTGCAACAGTGACAGATCTGGTGAATTTCCGACGGCCTCTTCCCAGAGCCGAAACCTCCTGATTGCCTGCGCATCAGACAATTCCGACGATTTTATCGCTCGACTGGTGAACGATCTCCAGTCCTCTTCGATTGAGGACCAGAAGCAAGCCGCCATGGAGATTAGACTACTGGCCAAGAACAAGCCGGAAAACCGCCTTAAAATAGCCGAAGCCGGCGCTATTAAGCCGTTGATTTCACTTATGTCGTCGCCGGACCTTCAACTCCAAGAGTACGGCGTCACGACGATTTTGAATCTCTCACTGTGCGATGAGAATAAGGAGCTTATAGTTTCTTCGGGAGCGATAAAGCCTCTGGTTCGAGCACTCAACACAGGGACATCAACGGCAAAAGAGAACGCGGCGTGTGCTCTGCTTCGCCTCTCGCATGTAGAACAGAACAAGGTCGTAATCGGAAGGTCGGGAGCCATTCCCCTTCTGGTGAAACTTCTAGAGAGCGGAAGCTTCCGCGGGAAGAAGGATGCCTCGACGGCGCTGTACTCCCTCTGTTCGGTGAAGGACAACAAAATAAGGGCGGTGCAAGCCGGAATAATGAAGCCGCTAGTGGAATTAATGGCCGATTTTGGATCAAACATGGTGGACAAGTCAGCGTACGTGTTGAGCGTACTGGTATCGGTGCTGGAGGCGAGAGCGGCGCTGGTGGAGGAAGGAGGAATTCCGGTGCTGGTTGAAATCCTAGAGGTGGGGTCGCAGAGACAGAAGCAAATATCAGCGGTTATACTATCACAGATTTGCGAGGACAACGCGGCCTACCGTACTATGGTGGCACGCGAAGGAGCAATACCACCGCTGGTGGCTCTGTCGCAGTCCGGCGCCGGCAGCTCCAAGCATAAGGCGGAGACACTAATAGAGCTTCTGAGGCAACCAAGACCCGGCAACGCCGCTATCAGTGCGCCGGGGGTCTCAGCATAA 1149 0.5326 MLSNLTEELSIASSSQSPIAVHSSSQRRLMGTESPVNFTYMGRSVSESSIDDHSSSAFSDCNSDRSGEFPTASSQSRNLLIACASDNSDDFIARLVNDLQSSSIEDQKQAAMEIRLLAKNKPENRLKIAEAGAIKPLISLMSSPDLQLQEYGVTTILNLSLCDENKELIVSSGAIKPLVRALNTGTSTAKENAACALLRLSHVEQNKVVIGRSGAIPLLVKLLESGSFRGKKDASTALYSLCSVKDNKIRAVQAGIMKPLVELMADFGSNMVDKSAYVLSVLVSVLEARAALVEEGGIPVLVEILEVGSQRQKQISAVILSQICEDNAAYRTMVAREGAIPPLVALSQSGAGSSKHKAETLIELLRQPRPGNAAISAPGVSA 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1312 382 Gene3D - 284 376 IPR011989 -
Prci2g1312 382 PANTHER U BOX DOMAIN-CONTAINING 91 366 - -
Prci2g1312 382 Gene3D - 185 283 IPR011989 -
Prci2g1312 382 SUPERFAMILY ARM repeat 89 358 IPR016024 -
Prci2g1312 382 SMART arm_5 327 366 IPR000225 GO:0005515
Prci2g1312 382 SMART arm_5 121 161 IPR000225 GO:0005515
Prci2g1312 382 SMART arm_5 244 284 IPR000225 GO:0005515
Prci2g1312 382 SMART arm_5 203 243 IPR000225 GO:0005515
Prci2g1312 382 SMART arm_5 162 202 IPR000225 GO:0005515
Prci2g1312 382 SMART arm_5 285 325 IPR000225 GO:0005515
Prci2g1312 382 Pfam Armadillo/beta-catenin-like repeat 205 243 IPR000225 GO:0005515
Prci2g1312 382 Pfam Armadillo/beta-catenin-like repeat 122 160 IPR000225 GO:0005515
Prci2g1312 382 Pfam Armadillo/beta-catenin-like repeat 163 201 IPR000225 GO:0005515
Prci2g1312 382 MobiDBLite consensus disorder prediction 49 72 - -
Prci2g1312 382 FunFam RING-type E3 ubiquitin transferase 81 371 - -
Prci2g1312 382 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 132 174 IPR000225 GO:0005515
Prci2g1312 382 Gene3D - 46 184 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1312 Prci-Chr2 9868157 9869947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1312 92 374 U-box Gene Family AT2G23140 47.703 6.51e-79 253
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1312 2 9868157 9869947 Prci8g0216 8 1312713 1314762 CCT