Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0236 ATGCCGTTGTCTTCAGTCCCAGCTCGTCTTACGCTTCTCGCACTTTTCTCTGCCACTACTTTCTATTGTTTATACAAATCTCGCCGCCTCAGACTCTTTAAATTTCCCCTATATCATAGACCCACTCTTCCCAATTCCAGAGGGAAGATTCTCTTCGTTTCTCAAACAGGTACTTCTAAATCCCTTGCTCAGCGTCTTCACCAGCTGTTGGCGGCCAACGATCTCGCGTTCGACCTCGTCGACCCCAAGGACTACGAGCCTGAAGACCTTCCTAAAGAAACTCTAGTCATCATCGTAGCTTCGACCTGGGAAGATGGAAAACCACCTCCCAGTGCCAAATTCTTTGCAACTTGGCTTGCTGAAAGTGCCAAGGATTTTAGGGTGGGCTCTTTGTTGCTTTCAAGGTGCAAATTTTCTATATTCGGCGTTGGGAGCCGAGCTTATGGAGCCACTTTCAATGCGGTTGCATGGGATTTGGCAAAGCAGATGAGGGCGTTGGGGGCGACGGAGATGCTTCCATTGTGTGAAGGAGATGTCGACATAGGCGATATAGATGGGGTTTTTGATCTTTGGTGTGCTAAGGTGGTTAGGATTTTGAAGGGTGCTGGTTTAGAAAACGGCAGGGTTTTTGAGTCCAGTGTCGTTGGGGAATCCAATGCTCAACGCCTTGAGGATTCCGACGAAGAGAACGATGCGGAGTCGGAGATTGTTGATCTAGAGGACATTGCGGGGAAAGCTCCTTCGAGGAAGTCAGTGCCAGTGGTTGAAGCTTATGGGAATTTGGACGGCAAAAGAGAAATGGTGACTCCAGTCATCAGAGCAAACTTGGAAAAGCAGGGATACAAAATTATTGGTTCACACAGTGGTGTTAAAATTTGTAGATGGACAAAGTCACAACTTCGAGGCCGAGGTGGTTGCTACAAGCATTCATTTTATGGCATAGAGAGTCATAGGTGCATGGAGGCAACCCCTAGTTTGGCATGTGCAAATAAATGTGTTTTCTGCTGGAGACATCACACAAATCCAGTAGGGAAAAGTTGGCAGTGGAAGATGGATGATCCAATAGAAATTGTAAATTCTGCGATAGATCTACATACAAATATGATTAAGCAAATGAAAGGAGTCCCAGGAGTCACCTTGGAGCGGTTATCTGAAGGCCTCTCTCCTTGCCATTGTGCATTGTCACTTGTTGGAGAACCTATCATGTATCCAGAGATAAACTCGCTAGTAGATGAGCTACATAGTCGGCGGATTTCTACATTTCTAGTGACAAATGCACAGTTTCCAGAGAAGATTAAGTTATTGAAGCCTGTCACCCAGTTGTATGTGAGTGTAGATGCTGCTACAAAGGATGCTTTGAAGGCAATAGATAGACCACTTTTTGGAGATTTCTGGGAGCGATTCATTGATTCATTGACTGCTTTAAACGAGAAAGAGCAGCGAACTGTTTATCGTTTGACCCTGGTGAAAGGTTGGAACACGGATGATGTGGATGCTTATTCTAAGCTCTTTGGTATGGGAAAACCTGACTTTGTAGAAATCAAGGGAGTAACGTATTGTGGCTCGTCCGCTACATCAAAATTGACCATGGAAAATGTACCCTGGCACGCTGATGTAAAAGCTTTCTCAGAGGCATTGGCTTTGAAAAGCCAAGGGGAGTATGAAGTTGCGTGTGAGCATGCTCACTCATGTTGTGTCCTCTTGGCGAAAACTGAGAAATTCAAGGTTGATGGCCAATGGTACACATGGATAGACTATGAGAAATTTCATGACCTGGTGGCTTCTGGGAGAAGTTTTGACAGCAGAGATTACATGGCTGCCACGCCATCCTGGGCTGTCTATGGAGCAGAGGAAGTTGGATTTGACCCTGGACAATTGAGATATAGGAAAGAGCGACATCATAAATCAAGCCAATGA 1917 0.4549 MPLSSVPARLTLLALFSATTFYCLYKSRRLRLFKFPLYHRPTLPNSRGKILFVSQTGTSKSLAQRLHQLLAANDLAFDLVDPKDYEPEDLPKETLVIIVASTWEDGKPPPSAKFFATWLAESAKDFRVGSLLLSRCKFSIFGVGSRAYGATFNAVAWDLAKQMRALGATEMLPLCEGDVDIGDIDGVFDLWCAKVVRILKGAGLENGRVFESSVVGESNAQRLEDSDEENDAESEIVDLEDIAGKAPSRKSVPVVEAYGNLDGKREMVTPVIRANLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNSAIDLHTNMIKQMKGVPGVTLERLSEGLSPCHCALSLVGEPIMYPEINSLVDELHSRRISTFLVTNAQFPEKIKLLKPVTQLYVSVDAATKDALKAIDRPLFGDFWERFIDSLTALNEKEQRTVYRLTLVKGWNTDDVDAYSKLFGMGKPDFVEIKGVTYCGSSATSKLTMENVPWHADVKAFSEALALKSQGEYEVACEHAHSCCVLLAKTEKFKVDGQWYTWIDYEKFHDLVASGRSFDSRDYMAATPSWAVYGAEEVGFDPGQLRYRKERHHKSSQ 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0236 638 Gene3D - 25 207 IPR029039 -
Prci2g0236 638 ProSiteProfiles Radical SAM core domain profile. 312 555 IPR007197 GO:0003824|GO:0051536
Prci2g0236 638 Pfam Wyosine base formation 507 570 IPR013917 -
Prci2g0236 638 FunFam S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase 256 584 - -
Prci2g0236 638 CDD Radical_SAM 324 524 - -
Prci2g0236 638 SUPERFAMILY Flavoproteins 49 199 IPR029039 -
Prci2g0236 638 Pfam Flavodoxin 50 181 IPR008254 GO:0010181
Prci2g0236 638 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 44 636 IPR034556 GO:0008033|GO:0051539
Prci2g0236 638 Pfam Radical SAM superfamily 324 502 IPR007197 GO:0003824|GO:0051536
Prci2g0236 638 ProSiteProfiles Flavodoxin-like domain profile. 48 196 IPR008254 GO:0010181
Prci2g0236 638 SFLD tRNA wybutosine-synthesizing 264 574 - -
Prci2g0236 638 Gene3D Aldolase class I 254 583 IPR013785 -
Prci2g0236 638 SUPERFAMILY Radical SAM enzymes 325 504 - -
Prci2g0236 638 SFLD tRNA wybutosine-synthesizing 264 574 IPR034556 GO:0008033|GO:0051539
Prci2g0236 638 PRINTS Flavodoxin signature 97 108 IPR001094 GO:0010181
Prci2g0236 638 PRINTS Flavodoxin signature 135 145 IPR001094 GO:0010181
Prci2g0236 638 PRINTS Flavodoxin signature 49 62 IPR001094 GO:0010181
Prci2g0236 638 PRINTS Flavodoxin signature 160 179 IPR001094 GO:0010181
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0236 Prci-Chr2 1708709 1715042 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g0236 2 1708709 1715042 Prci2g0236 2 1708709 1715042 ECH