Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0218 ATGGAATTGCGGCTAGTATTACTGAAGACAACTTTTATCTTGCTCTTTATTCAGTTTGGCCTAGCTCGAGGAATATCTTCGAGCTTCGGAATCGAAAGGGTCGCGCTGCGTCAGCTTCGCTCGTCGTTGGGAATTCGCAGCAAGTACTGGCCCATAAAAGCGGAACCGTGCAGGAACTGGACCGGGGTTCGGTGCCAGAACGGGCAAGTCGTTGGGATCAACTTATCCGGTTTAAGACGAACACGACTCGGGCTTCACCATGCTCGTTTCGCGGTGGATTCTCTTGTCAATTTCACACTCTTAGAGTCATTCGAAGCTTCTGGGTTCGTGCTAAATGGGTCCATTCCTGACTGGTTCGGACAGCGCCTGCGGACACTCCAAAGGCTCGATCTAAGTTCTTGCTCAGTCACGGGTCTCATTCCTCCGTCGCTTGGGAATTTGAGTGGGTTGAAGTATCTGATTCTAGCAGATAATAGTCTCACTGGGAGAATGTCTTCCACATTGGGGCAATTATCCAGCTTATCGGTTCTGAATCTCTCAGGAAATTCGCTTACTGGATCAATACCCAACTCTTTCTCGTCTCTTGTCAATCTCACAAGCCTTGACCTTTCTTCTAATTTTTTGTCTGGTTCCATTCCAGCCCATCTTGGTAACCTTAGTAGGCTTCAGTTTTTGAATCTTTCCGATAATAACTTCATCGCCTCAATACCTTACCAACTGGGTAATCTTTCTCAGTTAATTAAGCTTGATCTAAGCAAGAATTCTTTGTCTGGGCCATTGCCACGTGATTTGTTTTCTAATCTTACTCTCCTACGAAGCCTGTCTCTGAGTAGGAATGCTTTTGATGGCTTTCCTTCTCCTGCATTGTGGTCAATGAGCCACCTGTTCTTCCTTGATGTATCCAGCAACAACCTTACTGGCACCCTGCCGAAATTTGGAACAAATGTTAAATCTACCGGTGCCATCTTCAACCTCTCAAGCAATTTGTTCTATGGATATCTTAATACTTCGTTTAAGAAATTTAGGATCATTGATTTGTCCAGTAATTATTTCCAAGGTAAGGTGCCTGATCATGGCTCAAGTAATATTATTCTTGATACAAATTGCCTAATAATGAGTCCGAAACAAAGGATTTCTAGAGATTGTAGACTGTTTTATGCTCAGAGAAGCCTAATCTTTTTTGGTGCTCAAGAACCAGCGCCGTCACCTTTGGTCGAAGCAGAGTCCAGAAACAACAAACGAGTGACATTCATTTTGGCAGGCACATTTGGTGGGCTTGTGTTTATTGTAATTCTAGCATTGGTCCCGGTATTGCTTCTAGGAAAATGTGGTAATAGCACTGAAACTCGAAAAAGGGAAGCAAAAGAGGGACCCGTTCAAGAAGGGGAAAGTCCTATGCCTCCTAAGAATCCTATGTTAGACAGCGAAATGGGAGAATCATTTAGTTATGAGCAAATACTCTATTTGACTGGTAATTTTGCTGAAGCTAATATCATCAAGCATGGTCATTCCGGAGACCTTTTTAAGGGAACCCTGGAAGGTGAAGTGAGCGTGGTTGTGAAAAAGGTAGACTTGAACTTAGTCAAGGGAGAATCGTTCAAATTGGAATTGGAATTGCTAAGCAAGGTTTCGCATAAAAGATTGGTGCCGCTGCTGGGGCACTGCTTGGAGAATGAGAATGAGAAATTTTTAGTTTACAAGTATATGCCAAATAGAGATTTGGCTACTTGTTTGCACAGAGTGAGTGGCTCTGATGATAAAGAACCGCCCCTGGATTGGATCACCAGGTTGAAAATTGCAATAGGAGCTGCTGAAGGCCTATATTACATGCATGAGTGTAGCCCTCCCCTTGTCCATAGAGATGTCCAAGCAAGTAGTATACTTCTTGATGATAAATTTGAAGTTAGACTTGGAAGTTTGAGTGAGGTTACTGTCCAGGGAGATCTTCACCAGAATGTCATCACAAGGTTATTTCGCAAGTCACAATCTTTTGATCAAAACAATTCAGGTTCATCATCTGCGGCATGTGCTTATGATGTATACTGTTTTGGGAAGGTCCTGCTTGAGCTCGTTACCGGTAAGCTTGGAATTAGCAAGACAAATGATGCCAACACAAGAGAGTGGATAGAGCAAACATTGTCTTATATAAGCATACATGACAAGGAACAGATGACAAAGATGGTAGACCCATCTCTTATTGTGGATGAGGACCTGTTGGAAGAGGTATGGGCTATGGCAATTGTGGCCAGATCATGCCTCAACCCCAAGCCTTTTAAACGCCCTCTAATAGGGCATGTCCTAAAAGCACTGGAAAATCCTTTGAAGATAGTGAGGGAAGAATATAATAGTAGCTCAGCCAGGTTGAGAACAACTTCATCCAGGAGATCTTGGAGCACAGCATTCTTCGGTAGCTGGAGACAGAGCTCGTCAGAAAGTGCCACTGCAACTGCGAACAAAGAGGTTATTACTGCCAGTGGTTTTAAACAAACAGGAAGAGTAGGGTCTCAGGGTAGTGGTGGAAATGATCACTCTTCTTCCCACAAAAGGTTGTCCAGTGAAGTTTTCCCTGAACCATTGGAAATTCAAGAGGTGGAAACTGGGGGCGCAAAATAA 2613 0.4359 MELRLVLLKTTFILLFIQFGLARGISSSFGIERVALRQLRSSLGIRSKYWPIKAEPCRNWTGVRCQNGQVVGINLSGLRRTRLGLHHARFAVDSLVNFTLLESFEASGFVLNGSIPDWFGQRLRTLQRLDLSSCSVTGLIPPSLGNLSGLKYLILADNSLTGRMSSTLGQLSSLSVLNLSGNSLTGSIPNSFSSLVNLTSLDLSSNFLSGSIPAHLGNLSRLQFLNLSDNNFIASIPYQLGNLSQLIKLDLSKNSLSGPLPRDLFSNLTLLRSLSLSRNAFDGFPSPALWSMSHLFFLDVSSNNLTGTLPKFGTNVKSTGAIFNLSSNLFYGYLNTSFKKFRIIDLSSNYFQGKVPDHGSSNIILDTNCLIMSPKQRISRDCRLFYAQRSLIFFGAQEPAPSPLVEAESRNNKRVTFILAGTFGGLVFIVILALVPVLLLGKCGNSTETRKREAKEGPVQEGESPMPPKNPMLDSEMGESFSYEQILYLTGNFAEANIIKHGHSGDLFKGTLEGEVSVVVKKVDLNLVKGESFKLELELLSKVSHKRLVPLLGHCLENENEKFLVYKYMPNRDLATCLHRVSGSDDKEPPLDWITRLKIAIGAAEGLYYMHECSPPLVHRDVQASSILLDDKFEVRLGSLSEVTVQGDLHQNVITRLFRKSQSFDQNNSGSSSAACAYDVYCFGKVLLELVTGKLGISKTNDANTREWIEQTLSYISIHDKEQMTKMVDPSLIVDEDLLEEVWAMAIVARSCLNPKPFKRPLIGHVLKALENPLKIVREEYNSSSARLRTTSSRRSWSTAFFGSWRQSSSESATATANKEVITASGFKQTGRVGSQGSGGNDHSSSHKRLSSEVFPEPLEIQEVETGGAK 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0218 870 SMART LRR_typ_2 195 219 IPR003591 -
Prci2g0218 870 SMART LRR_typ_2 268 291 IPR003591 -
Prci2g0218 870 SMART LRR_typ_2 147 170 IPR003591 -
Prci2g0218 870 SMART LRR_typ_2 243 267 IPR003591 -
Prci2g0218 870 SMART LRR_typ_2 171 194 IPR003591 -
Prci2g0218 870 SUPERFAMILY L domain-like 55 356 - -
Prci2g0218 870 Pfam Leucine Rich Repeat 126 147 IPR001611 GO:0005515
Prci2g0218 870 FunFam Leucine-rich repeat receptor protein kinase EMS1 188 288 - -
Prci2g0218 870 SUPERFAMILY Protein kinase-like (PK-like) 467 770 IPR011009 -
Prci2g0218 870 Gene3D Ribonuclease Inhibitor 164 264 IPR032675 -
Prci2g0218 870 Gene3D Ribonuclease Inhibitor 265 366 IPR032675 -
Prci2g0218 870 Pfam Leucine rich repeat 173 232 IPR001611 GO:0005515
Prci2g0218 870 Pfam Leucine rich repeat 245 305 IPR001611 GO:0005515
Prci2g0218 870 Gene3D Ribonuclease Inhibitor 32 163 IPR032675 -
Prci2g0218 870 MobiDBLite consensus disorder prediction 823 870 - -
Prci2g0218 870 FunFam Predicted protein 464 568 - -
Prci2g0218 870 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 100 771 - -
Prci2g0218 870 MobiDBLite consensus disorder prediction 449 469 - -
Prci2g0218 870 Pfam Protein tyrosine and serine/threonine kinase 498 711 IPR001245 GO:0004672|GO:0006468
Prci2g0218 870 MobiDBLite consensus disorder prediction 823 845 - -
Prci2g0218 870 Gene3D Phosphorylase Kinase; domain 1 464 568 - -
Prci2g0218 870 ProSiteProfiles Protein kinase domain profile. 493 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci2g0218 870 FunFam Putative LRR receptor-like serine/threonine-protein kinase 569 791 - -
Prci2g0218 870 Gene3D Transferase(Phosphotransferase) domain 1 569 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0218 Prci-Chr2 1653917 1658403 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Prci2g0218 PK_Tyr_Ser-Thr 1.1e-19 CL0016