Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0202 ATGTTCTCGTCGTCAGCGCTGACAACTTCCTTTAATAATGTCATGACTTCTTTCTCGGCTAATTTGAAATTCCTTTCCCCACCTCGATATTCCAGAATTGTTCTTTATGTCAATTTGAACAATGTCAACTGGTTAATTAATAACTATCCATTATCCATTGGTGATTCACGGCTTCACTGTGTCAGTCCAATCATAATGCCTTTCAAAGATTTTGTTCGCCACCTAAGGGATGTTCGAGATGGCATGGGCAATATATCTATAAGAGGGGTAGAAGCAAATCGTATCCCTTGCCGTGGAAGATCTCTTATTGCCCCTGAATTGTCCTCACTAGCTTCGTTAGTGGCTCGGGAGAGCCCCTGGGCTAACTTACCATCTGAGTTGTTATTAGACATAATTCAGAGGGTGGAAGCAAGCGAATCTTCCTGGCCTGCCCGGCGGGTGGTTGTTGTTTGTGCCTCAGTTTGCAGGTCATGGAGAAAGATAACAGAGGAGGTGGTAAAGACACCAGAACAGTGTGGTTGGCTTACCTTCCCCATATCGCTGAAGCAGCCTGGTCCAAGAGAGACTCCCATCCAGTGTTTTATAAAGAGAGAAAGTGTGACTTCGAACTATCTTTTATATCTTGGTCCAAGTCCAGCTCTCTCTGGGGATATGAGTAAACTGCTATTGGCAGCAAAGAAGATTAGACGGACAACATGTACAGAGTTTATAATATCCTTGGTTGCGGACGATTTTTCTAAAGCAAGCAGTGCATACGTTGGAAAGTTGAGGTCTAATTTTCTTGGTACCAAGTTCATGATCTTGGATAGTCAACTCCCGCTTGATTCTTCCCTACCGTTGAATGGTAAATTGCAGCAAAGAATCTATTCAGAGCAGGTTCTTCCAAGGGCTGCTGTTGCAAAGTATAATGTGGCCACCGTATGTTACGAACTCAATGTTCTCCGCACAAGAGGTCCCAGGAGAATGCGGTGTACCATGCATTCTATTCCAGTTTCTGCCATTCAAGAAGGGGGCACTGCTCCTACTCCTCTGAGGTTTACTAGATGCCTTGATGATCATTCATCTACCACGGCTGTTTCGAAAGAAAGAAAGCCAGGAGTTGAGTATGGCTCCAACAGCGAAGACAAGCCTCCAGAATCAAACCACATCACAAGGGTGCCACTGATTTTGAAAAATAAAGCTCCTAGGTGGCATGAACAACTGCAGTGTTGGTGCTTGAATTTTAAGGGACGTGTTACAGTGGCCTCAGTAAAGAATTTCCAGCTCGTAGCAGCTGCAGAACCTCGACAAAATGCTTCAGCAGCAGAACACGATAGAGTAATATTACAATTTGGGAAAATTGGAAAGGACATATTCACCATGGATTGTTATCCCCTCTCTGCATTTCAAGCCTTCGCAATCTGCTTGAGCAGCTTTGACACCAAACCCGCTTGCGAGTGA 1440 0.4451 MFSSSALTTSFNNVMTSFSANLKFLSPPRYSRIVLYVNLNNVNWLINNYPLSIGDSRLHCVSPIIMPFKDFVRHLRDVRDGMGNISIRGVEANRIPCRGRSLIAPELSSLASLVARESPWANLPSELLLDIIQRVEASESSWPARRVVVVCASVCRSWRKITEEVVKTPEQCGWLTFPISLKQPGPRETPIQCFIKRESVTSNYLLYLGPSPALSGDMSKLLLAAKKIRRTTCTEFIISLVADDFSKASSAYVGKLRSNFLGTKFMILDSQLPLDSSLPLNGKLQQRIYSEQVLPRAAVAKYNVATVCYELNVLRTRGPRRMRCTMHSIPVSAIQEGGTAPTPLRFTRCLDDHSSTTAVSKERKPGVEYGSNSEDKPPESNHITRVPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPRQNASAAEHDRVILQFGKIGKDIFTMDYXYPLSAFQAFAICLSSFDTKPACE 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0202 480 SUPERFAMILY Tubby C-terminal domain-like 169 480 IPR025659 -
Prci2g0202 480 Gene3D - 115 167 - -
Prci2g0202 480 SUPERFAMILY F-box domain 118 183 IPR036047 GO:0005515
Prci2g0202 480 PANTHER TUBBY-RELATED 113 478 - -
Prci2g0202 480 Gene3D Tubby Protein; Chain A 178 480 IPR025659 -
Prci2g0202 480 PRINTS Tubby superfamily signature 408 424 IPR000007 -
Prci2g0202 480 PRINTS Tubby superfamily signature 437 456 IPR000007 -
Prci2g0202 480 PRINTS Tubby superfamily signature 390 407 IPR000007 -
Prci2g0202 480 PRINTS Tubby superfamily signature 458 480 IPR000007 -
Prci2g0202 480 PRINTS Tubby superfamily signature 236 252 IPR000007 -
Prci2g0202 480 PRINTS Tubby superfamily signature 252 276 IPR000007 -
Prci2g0202 480 PRINTS Tubby superfamily signature 301 328 IPR000007 -
Prci2g0202 480 Pfam Tub family 181 475 IPR000007 -
Prci2g0202 480 ProSitePatterns Tub family signature 2. 465 480 IPR018066 -
Prci2g0202 480 Pfam F-box domain 120 165 IPR001810 GO:0005515
Prci2g0202 480 MobiDBLite consensus disorder prediction 355 382 - -
Prci2g0202 480 ProSitePatterns Tub family signature 1. 408 421 IPR018066 -
Prci2g0202 480 CDD F-box_AtTLP-like 120 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0202 Prci-Chr2 1587139 1589724 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Prci2g0202 Tub 5.6e-101 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g0202 2 1587139 1589724 Prci2g0202 2 1587139 1589724 ECH