Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0119 ATGGCTTTCGTCGAAGATAAGATTAAAACCGGGGGGTTAATTGTGGGGGGTCAATCTCTTGCTGCTGAGATGAAGATGTTGAAGGAAATGCATGATCAATCTGGGGTCCGAAAGAGTATAAATTCCGAGTTATGGCATGCTTGCGCTGGTCCACTCGTTAGCTTGCCCCAGGTGGGGAGTCTGGTGTTTTACTTCCCTCAGGGACACAGTGAACAGGTGGCAGCGTCCACTAGAAGAACAGCAACCTCACAGATTCCAAACTATCCGAATCTTCAATCTCAGTTGCTTTGCCAAGTTCAAAATGTTACACTTCATGCAGATAAAGACACGGACGAAATCTACGCTCAAATGAGTCTCCAACCATTGAATTCTGAAAAAGATGTCTTTCCTATATCTGATTTTGGGATGAAGCCTAGCAAACATCCAAGTGAATTTTTCTGCAAAACTTTGACCGCTAGTGATACAAGCACGCACGGTGGTTTTTCTGTACCTCGCAGGGCTGCAGAAAAGCTCTTTCCCCCATTGGATTACACCATTCAACCCCCGACACAAGAACTCGTTGTCCGAGACTTGCATGATAATACCTGGACATTCCGACATATATACCGAGGTCAGCCGAAGAGACATCTCCTAACAACAGGATGGAGTTTATTTGTTGGCTCAAAGAGGCTTAAAGCAGGCGACGCTGTTCTTTTTATCAGGGACGAAAAATCACAACTGCTAGTTGGTGTTAGGCGTGCAAATCGTCAACAATCAACATTGCCGTCATCTGTCCTTTCCGCTGATAGCATGCATATTGGTGTGCTAGCTGCTGCAGCTCATGCTGCTGCTAATCAGAGCCCATTTACTGTTTTCTACAACCCAAGGGCATGCCCGTCAGAATTTGTTATTCCGCTGGCTAAATACAGAAAAGCTGTATATGGTACCCAGCTCTCAGTTGGCATGAGATTCGGTATGATGTTTGAGACAGAGGAATCGGGTAAGCGCAGATATATGGGCACTATAGTTGGCATCAGTGACTTGGATCCTTTGAGGTGGCCTGGTTCTAAGTGGAGAAATATTCAGGTGGAGTGGGATGAGCCTGGGTGTAGCGATAAGCAGAATAGAGTTAGTGCTTGGGAAATTGAGACTCCTGAAAGTCTTTTTATCTTTCCTTCTTTGACTTCGAGTCTGAAACGACCATTTCAATCTGGATCTTTTGAAAATGAGTGGGGGACTTTGTTGAGAAGGCCTTTTATACAAGTTCCTGAAAATGCAAACTTGGAGCTCCCAAACTCTTTGCAAAATCTATACATGGAACACCTGATGAAAGTTCTTTTCAAACCTCAACTGGTGAACAATCCTGGAGCCTTTTCATCAGTCATGCAGCAAGAATCTGCTGCCAAGAGTGATCTCTCTCAAGATTTGAAGAATACGCTGGCGACAGATAGTCAAAAAGCTCGTCTTGTATGCTCAGGGAGCGCACCGCCAAAAAGTCTGGATCCTTCTCTATCTCTCCCTGACCAATCTAATGCCCTCAACTTGCATTCCCTGTTGAGAAGTGATCAACCTGGGAAATTGCATCCTCTGCCTAAAATTGAGAATGCTCAATCTTCTGGTGCAGTTTCTGCAAAGACTAAATTAGAATCTGTGGACTTAACTAATCATATTATTGACTGTCCTTCAATAGAAGGATGCAATATGGAAAAAGTGGCGGCAAACCCTATGAACCCACCGGGCCATGCGAGTCAAATGGCATTGCTTAATCAAAACCAGGGTCCATGGCCCGTACAGCCACAGTTAGAATCAACAATATCTCCTTCGCAACTTGTTGATATTCCTCAATCTGATTATGCTCTTTTAAATGGCCTGCTTCCTCAGGCAGATGTTGATGAATGGATGTTGTATTCCTCCTGCCAATCTTTTCCTGGAGTAAGCAGATCAACTGGGCCTTTGCAAGAACAGTCTGCCCTTCTTCCCCAAGCAGTTAATACCCCTTTACCCTCCATGAGCCAAGAAATGTGGGATCATTATCTCAAGAATTTGAAGTCGTTTTCTCAAGCTGACCAATTAACACCCGTCCCTCAGCAAGGGTTGCCGAACTTTAATAGTATATCTAATTCAAACAATCCGAGGGACCTATCAGCTGAGAGCAATAATCAAAGCGGGGTGTGTAGTAGTGTCAATGTTGATGCTAGTAACGGTGCAAGTACTATGGTTGATCCTTCTACTTCGAGTACCATTTTGGATGAGTTTTGCGTGTTGAAGGATGGGGAGTTCCAGAACCCATCGGATTGCATGGTGGCCAACATAAGTTCAAGCCAGGACGTCCAGTCGCAGATAACCTCCGCAAGTCTGGCAGAGTCGCATGCTTTTCCTCTGCAAGACATACCTGACAACTCAGGCGGTGGTGTATCCTCAAGCCACGTTGATTTTGATGAAAGCAGCTTTTTGCAAAATAACTCCTGGCCGCAAGTTGCTGCACCCATGCGAACCTACACCAAGGTTCAAAAGGCTGGGTCCGTGGGAAGATCATTAGATGTTACCACTTTTAAGAACTACGAGGAACTGATCTCCGCAATTGAACGGATGTTTGGACTTGAGGGTTTGCTGAACGACACCAAGGGTTCAGGATGGAAATTGGTTTATGTAGATTATGAGAACGATGTTCTGCTTGTTGGGGATGATCCCTGGGAGGAATTCGTGGGATGTGTCCGCTGCATCAGGATTTTATCTCCCGTGGAAGTAAAACAGATGAGCGAGGAGGGAATGATGCTTTTGAACAGTGCTGCTGTGCAACATTTCAATGGACCCGTGTCAGGTGGCTGTCCTTAG 2814 0.4527 MAFVEDKIKTGGLIVGGQSLAAEMKMLKEMHDQSGVRKSINSELWHACAGPLVSLPQVGSLVFYFPQGHSEQVAASTRRTATSQIPNYPNLQSQLLCQVQNVTLHADKDTDEIYAQMSLQPLNSEKDVFPISDFGMKPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDAVLFIRDEKSQLLVGVRRANRQQSTLPSSVLSADSMHIGVLAAAAHAAANQSPFTVFYNPRACPSEFVIPLAKYRKAVYGTQLSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNIQVEWDEPGCSDKQNRVSAWEIETPESLFIFPSLTSSLKRPFQSGSFENEWGTLLRRPFIQVPENANLELPNSLQNLYMEHLMKVLFKPQLVNNPGAFSSVMQQESAAKSDLSQDLKNTLATDSQKARLVCSGSAPPKSLDPSLSLPDQSNALNLHSLLRSDQPGKLHPLPKIENAQSSGAVSAKTKLESVDLTNHIIDCPSIEGCNMEKVAANPMNPPGHASQMALLNQNQGPWPVQPQLESTISPSQLVDIPQSDYALLNGLLPQADVDEWMLYSSCQSFPGVSRSTGPLQEQSALLPQAVNTPLPSMSQEMWDHYLKNLKSFSQADQLTPVPQQGLPNFNSISNSNNPRDLSAESNNQSGVCSSVNVDASNGASTMVDPSTSSTILDEFCVLKDGEFQNPSDCMVANISSSQDVQSQITSASLAESHAFPLQDIPDNSGGGVSSSHVDFDESSFLQNNSWPQVAAPMRTYTKVQKAGSVGRSLDVTTFKNYEELISAIERMFGLEGLLNDTKGSGWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPVEVKQMSEEGMMLLNSAAVQHFNGPVSGGCP 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0119 937 ProSiteProfiles PB1 domain profile. 824 908 IPR000270 GO:0005515
Prci2g0119 937 SMART B3_2 146 248 IPR003340 GO:0003677
Prci2g0119 937 CDD B3_DNA 145 246 IPR003340 GO:0003677
Prci2g0119 937 SUPERFAMILY CAD & PB1 domains 818 903 - -
Prci2g0119 937 FunFam Auxin response factor 819 913 - -
Prci2g0119 937 Gene3D - 820 913 - -
Prci2g0119 937 FunFam Auxin response factor 144 248 - -
Prci2g0119 937 MobiDBLite consensus disorder prediction 685 715 - -
Prci2g0119 937 FunFam Auxin response factor 310 382 - -
Prci2g0119 937 Pfam B3 DNA binding domain 146 247 IPR003340 GO:0003677
Prci2g0119 937 ProSiteProfiles B3 DNA-binding domain profile. 146 248 IPR003340 GO:0003677
Prci2g0119 937 Pfam Auxin response factor 272 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Prci2g0119 937 SUPERFAMILY DNA-binding pseudobarrel domain 134 275 IPR015300 -
Prci2g0119 937 Gene3D - 144 247 IPR015300 -
Prci2g0119 937 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 37 914 IPR044835 GO:0003677|GO:0006355|GO:0009725
Prci2g0119 937 Pfam AUX/IAA family 822 909 IPR033389 -
Prci2g0119 937 Gene3D - 310 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0119 Prci-Chr2 969890 976169 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Prci2g0119 AUX_IAA 3.6e-10 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g0119 2 969890 976169 Prci2g0119 2 969890 976169 ECH