Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0020 ATGGTCTCTGCAAAACCGACGAGCGCCAAGAACCCTAAAAATGTGTATCACATCGGAGGCCTCCAAGTGGAATTTCCTTACCATCCATATGGTTCTCAGTTTGCATTTATGGGTAGAGTCATCTCTACCCTTAACCGGGCTCAGAGAGAAGGCCATTGTCACGCATTGCTCGAGTCTCCAACCGGTACTGGCAAGTCCCTTTCCCTTCTTTGTTCTTCCCTCGCTTGGCAGCAGAACTACAAGTTAAATAAACAGCACACAAATCTCTCTCACCTGAAACCCGCACCAGAAGCAACGACAGACCCTCTTGTTTACGGTGGTGGATTTGTTCCTGACGAGGTTTTTCCGACATCAGAAAATGTGGAGCTGCCAGAGTCTGGGGCTAACAAGATGCAGAAGAAAAAGGCTGCACCCACTATATATTATGCTTCGAGGACACACTCACAAATTTCTCAAGTAATTCATGAATTGCGGAAAACAGCTTATAGAGTGCCTATGGCTGTGCTGGCATCACGGAAGCATTATTGTACCAATAAACATATACTAGCAAAAGAAAATATTGATGAAGAATGTAAACTACTTTTGAAAGATCAGGCAATAGGATGCCCAGAATTCAAAAATGCGCATAAAGTCAAAAGTCATCCATCCCTACAAAGAGGAGGATGTTATGAGGTACATGATATAGAAGATATTGTGAAAGTTGGACAAGCAGTGAAAGGTTGCTCCTATTATGCAGCCCGCTCTATGTCAGATGATGCGCAATTGGTATTTTGTCCTTATAGTTACATAATCAATCCAGTCATCCGGGGAGCAATGGATGTAGATATTAAAGGAGCTATTGTGATTCTGGATGAAGCCCACAATATAGAGGATATCACTCGCGATGCTGGTAGTGTTGATATTGAAGAGGATGTTTTGGATAAGCTGCAAATGGAGCTTCAACAACTTTGTCCTGTCAATGCTTTGATATACCAACCTTTGTATGAAATGGTGCAGGGTCTTACAAGCTGGATAGAACGTAGTAAAAAAAAACTAGAAAAGCGTGATTTTCAGCACTATGTATCTTGTTGGACTGGGTCAAATGCTTTAACAGAACTCCAAGAAGCAAATATTTCACGTCAGTGCTTCCCTATCTTGCTAGAATCTGCTACCAAGGCAATCAAAGTTGCTTCAGACTTGGAGTTAGATGTACCACATTTAAGTGGCATGTCAGTAATGACACTAGAAGGCTTATTCTCTTCACTAACATATTTCTTCTCAAGAAATGGTTCTCACATGCTGGATTACCAGCTTGCTCTGCAGCGAAGTGTTAAGAAAGAAGCTGGAAGATCTTTTGGAAATTGGACCCACACTTTGAGTTTATGGTGCTTGAATCCAGCAGTTGTGTTTAGTGACATTGCCAATCTTTCTTTATCGGTCATTTTGACTTCTGGGACTTTGTCACCACTGAACTCCTTTTCTTCTGAGCTAGGAGTTCAGTTTGAAACTAGTCTGGAGGCTCCACATGTAATTGATGTTGACTCTCAGGTATGGCCTGCCGTAATTTGTACTGGTCCAGGTAATTATCCTTTGAATGCAAGTTATAAAACAGCAGATGTATATGCATTCCAGGATGCAGTTGGAAGATCTTTAGAGGAAATCTTCAAAATTGTCCCTGGTGGCTGTCTTGTTTTCTTTCCAAGTTATAAATTAATGGAGAAATTATGCAATCGATGGTCCGAAACAGGTCAATGGTCTCATCTAAATGCGGAAAAGTCACTTTTTGTTGAACCTAGAGGAGGAAGCCAAGATGATTTTGATCTGGCTTTAAAAGGGTATTATGACTCAATTCATCTCCACACTTCACCTGCATTGGGCAGGAAAAAAAGGGTTAAGAATGTTGGCTATAGTCACTTACATGCAGTCAATTCTCCACAAAATTCTAAGAAAGGAGGAGCTGCTTTACTTGGCGTTTGTCGAGGAAAGGTTTCTGAAGGCATTGATTTTTCTAATGATAATGCTCGAGTGGTTATTATAGTCGGCATTCCATTTCCCAACATAAATGATATTCAAGTTGCGCTAAAGAAGAAATACAACGACACATACAAATCATCCAAAAATCTTTTGAGTGGAAATGAGTGGTATTGCCATCAAGCATTTCGAGCTTTGAATCAAGCAGCAGGCCGTTGTATACGACATAGGCTTGATTATGGAGCAGTCATCTTATTGGATGAACGTTTTCAGGAAGAAAGAAATAGAGCATTCATTTCAAAGTGGTTAAGAAAAACCTTAAGGATATATGACAGTTTTGACTTGTCTTTGAAGGGAATGAAATCATTCTTTGAGAATGCCAAGGAGCGGTTTGGCACAACTTTCACTCAAAATTTGGGTTTAAACCAGGAATGTGACCAAGCCAAGGATCAGAATATGGGATTTATAAGAAAGATAAATAAGAAACTGTTAAAGTCTGACATTGGTGGTGAGAAAAATATAGAAATGATCAAGGATGAGAGTCAACCATCTGTGCAAAAGATTAATGATTCATACAACTGTAAAGACTGTTTTGACCCAAACGACTGCAAACAGGCAGGACCATGCTTCACTGGGGTATTATCTGCGGTAGTTATACATGAAGAAGTCTCCGTTGTGAAGGTAACCCCTTGCGTGGATGGCAGCATTGTTCCTGCTAGCCCTGTTTATGGTTGTAAGGACGACCACTGTAGCTCCACCTTAGTTGAGGCATCTTGCGAATTAGATGATCAGTCAATCCTTCCAATTTCTTTGAGTATTGGAAGTGGAATTAAAGATTCTTCAACAGCTCAGTGTTTAATATCAGTTACTCCTGAAAGAAAAGTATCTGCAAGCAGCTGTCATACTGTGGAAATAGAGTCATCTTTGAATAGGAGTGTTAATTCTCACACCCAGAAAAGGAGAAAGTCCATGGACGTACCATTTATAAGCCTTGTTGAGGAAGAAAATTACATCACCCCCTGTGCTAGCATCCCTTCCAGGCAATCTGTGGGCTTGGTGAATGCCGATGAGGCAATTAATGGAAATGAATCTGATTCTCACAAAAAATTGAAGCCAAATTCACTTCAATCACAGACAAGCAATCTGACTAGTTCATTTTTATTAACTGATCCTCTCATGGAGAAAAGGTTACAGATATTTTGCTCACTTTGCAAAAACCCTTTGGGTCGGCCTGAGAATAATCTGTATATTACATGTTCTTTGACTTCGTCATCAAAAGTGCACTTAAGATCTCTTTTGAAACGGAGACTGAAGGCTTGCGATGATGAGGATTTAAGAAGTGTACCAGTTATTGTAACTTGCATTTCATATGTTAATCAACGCATCTGCAATAGAGTCAACGGAAGTGTTCCAGAGCAGGGTATTTGGTGCCCAGAAGATGGGTGTGTTTTCAGGTCTATATTTTGCCCCTTCTGCAGCAAACCCAGCAATTTGCTTGGTGTACAGATTATGGCAACTGATGCATCAAATAGTCATTTGCTTGACAAGATGTTGATTTACTTTGATTTTTTGGAAGTTAAGAATCTTGAGGAATCAAGGAGTGAGGATTCAAAGAAAGCGGGTTTGCTGCCAAATACAGGCTCTGATGCGGACGAAACTGCTGCCTTGAATTCTTTTGACAAATTTGTTGATCTTACACGGCTTGAGAAGCCAAGAGTCTTGAAGACTAGGAAATCAAAGAATTTGACTTGGATGTAG 3708 0.4035 MVSAKPTSAKNPKNVYHIGGLQVEFPYHPYGSQFAFMGRVISTLNRAQREGHCHALLESPTGTGKSLSLLCSSLAWQQNYKLNKQHTNLSHLKPAPEATTDPLVYGGGFVPDEVFPTSENVELPESGANKMQKKKAAPTIYYASRTHSQISQVIHELRKTAYRVPMAVLASRKHYCTNKHILAKENIDEECKLLLKDQAIGCPEFKNAHKVKSHPSLQRGGCYEVHDIEDIVKVGQAVKGCSYYAARSMSDDAQLVFCPYSYIINPVIRGAMDVDIKGAIVILDEAHNIEDITRDAGSVDIEEDVLDKLQMELQQLCPVNALIYQPLYEMVQGLTSWIERSKKKLEKRDFQHYVSCWTGSNALTELQEANISRQCFPILLESATKAIKVASDLELDVPHLSGMSVMTLEGLFSSLTYFFSRNGSHMLDYQLALQRSVKKEAGRSFGNWTHTLSLWCLNPAVVFSDIANLSLSVILTSGTLSPLNSFSSELGVQFETSLEAPHVIDVDSQVWPAVICTGPGNYPLNASYKTADVYAFQDAVGRSLEEIFKIVPGGCLVFFPSYKLMEKLCNRWSETGQWSHLNAEKSLFVEPRGGSQDDFDLALKGYYDSIHLHTSPALGRKKRVKNVGYSHLHAVNSPQNSKKGGAALLGVCRGKVSEGIDFSNDNARVVIIVGIPFPNINDIQVALKKKYNDTYKSSKNLLSGNEWYCHQAFRALNQAAGRCIRHRLDYGAVILLDERFQEERNRAFISKWLRKTLRIYDSFDLSLKGMKSFFENAKERFGTTFTQNLGLNQECDQAKDQNMGFIRKINKKLLKSDIGGEKNIEMIKDESQPSVQKINDSYNCKDCFDPNDCKQAGPCFTGVLSAVVIHEEVSVVKVTPCVDGSIVPASPVYGCKDDHCSSTLVEASCELDDQSILPISLSIGSGIKDSSTAQCLISVTPERKVSASSCHTVEIESSLNRSVNSHTQKRRKSMDVPFISLVEEENYITPCASIPSRQSVGLVNADEAINGNESDSHKKLKPNSLQSQTSNLTSSFLLTDPLMEKRLQIFCSLCKNPLGRPENNLYITCSLTSSSKVHLRSLLKRRLKACDDEDLRSVPVIVTCISYVNQRICNRVNGSVPEQGIWCPEDGCVFRSIFCPFCSKPSNLLGVQIMATDASNSHLLDKMLIYFDFLEVKNLEESRSEDSKKAGLLPNTGSDADETAALNSFDKFVDLTRLEKPRVLKTRKSKNLTWM 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0020 1235 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 279 288 IPR002464 -
Prci2g0020 1235 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 18 776 IPR045028 -
Prci2g0020 1235 Gene3D - 29 334 IPR027417 -
Prci2g0020 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 736 IPR027417 -
Prci2g0020 1235 SMART deadxpd 21 321 IPR006554 GO:0003678|GO:0016818
Prci2g0020 1235 SMART Cxpdneu3 562 742 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Prci2g0020 1235 FunFam Fanconi anemia group J protein homolog 521 768 - -
Prci2g0020 1235 Pfam DEAD_2 142 305 IPR010614 GO:0003677|GO:0003678|GO:0005524
Prci2g0020 1235 Gene3D - 521 766 IPR027417 -
Prci2g0020 1235 Pfam Helicase C-terminal domain 544 755 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Prci2g0020 1235 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 19 357 IPR014013 GO:0005524
Prci2g0020 1235 FunFam Fanconi anemia group J protein-like isoform E 126 338 - -
Prci2g0020 1235 CDD SF2_C_XPD 508 740 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0020 Prci-Chr2 208472 227623 Dispersed