Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3531 ATGGGCGTTACCGCTCAACGTCCTTCCCTCCAAAGTGCAAACCCCAACCTTGCTGCCTCTTCTCTCCTTGCCGTTTCACCAGATATGTCGGCCAACGATCCCGGTTTCATACTCTTCGGCCAAAAGATGTCCTCCTGCTCCTCGGGATCTCAGATTCCGGTCGCCTCTTCTCTGATCCCTTCCAACTCTCCCCCCGAGCATGCTTGGAGTAGCTCAAAGAAATCAGAAGTCGGAATGCCTTCCACTGACAACTCCGAACAACAGGATGTGCAGAAGGATGAGCCAATGAAGATGAGCAGCACAGAAGAAATTAAAGCGATGAAGAAACCGGACAAGATTCAACAGTGTCCACGATGCAACAGTATGGACACAAAGTTCTGTTATTTCAATAACTACAACGTGAATCAACCTCGACATTTCTGCAAGAGTTGCCACAGATACTGGACTGCCGGTGGAGCAATGAGAAATGTCCCGGTGGGTGCTGGAAGACGGAGGAACAGGCAGCTATCCTCCCCATACCGCCACACCTCATCATCGTCTGAGGGCACTCCATCTCACCAACTCTTCTCGACACTTGAATCCTCAGCAGCATTCAAGTCAGCCCCACCAGATAATACAAGTACCGTGTTGAGATTTGGTCCAGAGGCCCCTGTTGCTGAATCGGCTGCTTCAATTCTGAATCTTGGAAGTGGGGAGGAGGTATCCAGATGTGGATCTGCTGTGACTAGTGCTGGTGGTGCCCGGGGAAATGAAGTACCAGAACTTCCAATGCAATGGAGCAGACCAGGTGTGTCCAATCAGGTTAATACAACGAATGGCGTGCGATGTTATCCTGCTGCTCCATGGGTGTTTCCAGCGCAGTGGCATGCTGAGAATGGGATTGGCTCACCAAACATTCCCGTACAATTTGTTGCAGCTCCATGCTGGAGTAATGGGAATGTCTGTTCTGCAGGAGGAACAGGAACGGTTTCAGTTGGCTCAAATGGTTGCCTCTCCTCTTCGTCCTCCACCAGTAATGGCCATTGCTCAGGCAACGGTTCCCCAGCACTTGGAAAGCACTGA 1062 0.5104 MGVTAQRPSLQSANPNLAASSLLAVSPDMSANDPGFILFGQKMSSCSSGSQIPVASSLIPSNSPPEHAWSSSKKSEVGMPSTDNSEQQDVQKDEPMKMSSTEEIKAMKKPDKIQQCPRCNSMDTKFCYFNNYNVNQPRHFCKSCHRYWTAGGAMRNVPVGAGRRRNRQLSSPYRHTSSSSEGTPSHQLFSTLESSAAFKSAPPDNTSTVLRFGPEAPVAESAASILNLGSGEEVSRCGSAVTSAGGARGNEVPELPMQWSRPGVSNQVNTTNGVRCYPAAPWVFPAQWHAENGIGSPNIPVQFVAAPCWSNGNVCSAGGTGTVSVGSNGCLSSSSSTSNGHCSGNGSPALGKH 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3531 353 ProSiteProfiles Zinc finger Dof-type profile. 114 168 IPR003851 GO:0003677|GO:0006355
Prci1g3531 353 MobiDBLite consensus disorder prediction 333 353 - -
Prci1g3531 353 MobiDBLite consensus disorder prediction 157 186 - -
Prci1g3531 353 Pfam Dof domain, zinc finger 111 168 IPR003851 GO:0003677|GO:0006355
Prci1g3531 353 MobiDBLite consensus disorder prediction 87 111 - -
Prci1g3531 353 MobiDBLite consensus disorder prediction 240 264 - -
Prci1g3531 353 MobiDBLite consensus disorder prediction 54 86 - -
Prci1g3531 353 ProSitePatterns Zinc finger Dof-type signature. 116 152 IPR003851 GO:0003677|GO:0006355
Prci1g3531 353 MobiDBLite consensus disorder prediction 171 186 - -
Prci1g3531 353 PANTHER CYCLIC DOF FACTOR 2 31 353 IPR045174 GO:0003700|GO:0006355
Prci1g3531 353 MobiDBLite consensus disorder prediction 54 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3531 Prci-Chr1 52366285 52368672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3531 81 235 C2C2-Dof Transcription Factor Family AT3G47500 48.101 1.72e-38 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Prci1g3531 zf-Dof 3.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3531 - - pcin:129288604 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3531 1 52366285 52368672 Prci1g3531 1 52366285 52368672 ECH