Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2927 ATGGAAATGGAGGATCACCACAACAATCACCATCATCCCCAGCAATATGCCATGCCGGATCTCAGGCAGCTCATCAATGGAGGTCCCAGGTCGACTGCCACCCATTTCCCCTCCATACCTGCGCAGCCCACGGCGGAGCTCTTCCAGCCTCATCGGAATCTCACGCCCGCCCACCATCAGCACTATGACATGATGATGTTTGGTCGTCATGTCGCCGATGTAATGCCTCGTGCCCTCCACGACTTTGCCTCCGATTCACCTCCCGCCGCTGCTCCACCCACTAACAATATCACTGTAGCCACTCCGGCTACCACCGCCAGCGCTTTCACTCCTCCGCTCAGTGCCTTGGAGGCTGATACCCCGGGCTGCCTCGCTGGGGATGCCTCCACCGGAAGATGGCCCAGGCAGGAAACACTCACTCTTCTTGAGATCAGATCTCGTCTCGACCCTAAATTCAAAGAGGCCAACCAAAAGGGCCCCTTGTGGGACGAAGTCTCCAGGATCATGTCGGAAGAATATGGGTACCAAAGGAGCGGGAAGAAATGCAGGGAAAAATTCGAGAACCTGTACAAATATTACAAGAAGACAAAGGAAGGTAAGGCGAGGAGACAGGATGGGAAGCATTACAGGTTCTTCCGGCAACTGGAAGCTTTGTATGGAGGAAACAGCAACTCAACATCAGTACCAGAAACCAATTATGGTAGCTGCGGAATTCGCTTCCAGACACCCTCCCAAACAAATCAAGACATGTTTCAGTCTCACAATCACAAGACTTGTGATAGCCTCAGCCTCACAAACTCAACGGATTTCGGGACTTCATCATCGGAGGACAACAATCTTTGCAGCATGGAAAATGATTCCACGGAAAAGGGGAGGAAGAGGGGCGGTGGAAGCAGATGGAAGGCAAAAATAAAAGAGTTCATTGACTCACAGATGAAGAAGCTGATCGAGAAGCAAGAGGCGTGGATGGATAGGCTCGTGAAGACGCTTGAGCAGAAGGAGAAGGAGAGGGTTTTAAGAGAGGAAGAATGGAGAAGACAAGAGGCTACAAGGCTGGAAATGGAGCAAAAGTTTCGGGCTAAAGAGAGAGCATGGATTGAAGCAAGGGATGCGGCTCTAATGGATGCCTTGCAGAAGCTAACGGGAAGAGAGGTAAAAGCTCAGTCTCCAGTTGATCAGGCTCTAATCATGGCTAATGAAATTCAGAATCAAAGGGAGAACCAGAACGAAGAGGGAAGTGAAATCCTAAATGGCAGTCATAGAGGCGGTGACAACTGGTCAAAAAGTGAGATTACAAGGCTGGTGGAGTTGAGGGCGGAGATGGAGTCCGGGTTTCAGCAAAATGGGTGTTCGGAGGTTCTGTGGGAGGAAATAGCCAACAAAATGGTTTGCATTGGCTACGAAAGGACTGCTTTGATGTGCAAACACAAGTGGGAAAGCATAACCAACTATACAAATGCCAAGGAAGGAAACAAGAAGCGCAAGGAAAAGTCTAAGAGCTGTTTTTACTTCGACAGCAACATCAATGACCAGCCATCCTTGTATAACCAAGGAACTGCTACGTTTTGTGATATCAACGATCAACGGCACGACAATGAGAGGCTACAAACAAACGATGGCTCTTCACCTTCCAATGCCAACGCGGTTACGGCTGACGTTAACTGCTTTCCCTTCTTTATTAGCACCGAAGGATCAGAAAATTTGTGGGAAAACTATGGGTTGAAGATTAATAAAGGAAGTCAAAACCAGTGA 1752 0.4903 MEMEDHHNNHHHPQQYAMPDLRQLINGGPRSTATHFPSIPAQPTAELFQPHRNLTPAHHQHYDMMMFGRHVADVMPRALHDFASDSPPAAAPPTNNITVATPATTASAFTPPLSALEADTPGCLAGDASTGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMSEEYGYQRSGKKCREKFENLYKYYKKTKEGKARRQDGKHYRFFRQLEALYGGNSNSTSVPETNYGSCGIRFQTPSQTNQDMFQSHNHKTCDSLSLTNSTDFGTSSSEDNNLCSMENDSTEKGRKRGGGSRWKAKIKEFIDSQMKKLIEKQEAWMDRLVKTLEQKEKERVLREEEWRRQEATRLEMEQKFRAKERAWIEARDAALMDALQKLTGREVKAQSPVDQALIMANEIQNQRENQNEEGSEILNGSHRGGDNWSKSEITRLVELRAEMESGFQQNGCSEVLWEEIANKMVCIGYERTALMCKHKWESITNYTNAKEGNKKRKEKSKSCFYFDSNINDQPSLYNQGTATFCDINDQRHDNERLQTNDGSSPSNANAVTADVNCFPFFISTEGSENLWENYGLKINKGSQNQ 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2927 583 Gene3D - 426 485 - -
Prci1g2927 583 Gene3D - 133 195 - -
Prci1g2927 583 CDD GT1 425 484 - -
Prci1g2927 583 SMART sant 422 484 IPR001005 -
Prci1g2927 583 SMART sant 129 192 IPR001005 -
Prci1g2927 583 Coils Coil 391 411 - -
Prci1g2927 583 CDD GT1 132 197 - -
Prci1g2927 583 ProSiteProfiles Myb-like domain profile. 418 482 IPR001005 -
Prci1g2927 583 ProSiteProfiles Myb-like domain profile. 125 190 IPR001005 -
Prci1g2927 583 PANTHER FI21293P1 118 533 - -
Prci1g2927 583 MobiDBLite consensus disorder prediction 270 297 - -
Prci1g2927 583 MobiDBLite consensus disorder prediction 270 285 - -
Prci1g2927 583 FunFam Trihelix transcription factor GT-2 426 487 - -
Prci1g2927 583 FunFam trihelix transcription factor PTL-like 133 195 - -
Prci1g2927 583 Coils Coil 316 343 - -
Prci1g2927 583 MobiDBLite consensus disorder prediction 404 424 - -
Prci1g2927 583 Pfam Myb/SANT-like DNA-binding domain 132 218 IPR044822 -
Prci1g2927 583 Pfam Myb/SANT-like DNA-binding domain 424 505 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2927 Prci-Chr1 47934568 47937929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2927 12 578 Trihelix Transcription Factor Family AT5G03680 46.341 1.20e-141 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Prci1g2927 Myb_DNA-bind_4 9.7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2927 - - gmx:100813245 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2927 1 47934568 47937929 Prci1g2927 1 47934568 47937929 ECH