Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2297 ATGATGATTTTTAGTAATTTAGAAATCGGTCTAGTGATTGATTTGACAAACACTACTCGTTACTACCCAATATCAGATTGGACCAGAGAAAGAATTCGTCATGTTAAGATAAGATGCAAAGGAAGGGATTCCGTGCCCGACGATGAATCTGTAAACAGATTTTGCAATGAGGTCCTGGGTTTTCTCTCCCGAAGAACAAACACAAATGAATATATATTCGTGCATTGCACCCATGGGCACAATCGCACTGGCTATATGATTGTTCATTTTCTTGTCCGCACAGAATCAATTTCAGTCACTGAGGCAATGAATAAATTTTCTGCAGCACGTGACCCTGGAATTTACAAGCAGGATTATATTGATGCTTTGTACATGTATTATCATGAAAGGAAGCCTGAAGAAGTTGTTTGTCCTCAAACTCCAGAGTGGAAGAGACTTGCTGATCCTGAGTTTCATCGCGCAGTTGACAAATCTGTAGAAAATATTGGTGGTGTTCCTTTGCATGAGAATATCACGCGGAATGGAGTATTGACAAACGATGATGTTTTAGGAGATCCTGTACATTCAAATCAACTGCATTCAATGCGACTAGAGTGTTACCAACTGCTTAAGTTGGGCACAGGGGGAAGGGGATCTTTGCAGTTTCCAGGATCACATCCTGTTTCCCTCAACAGGGACAATGTACAACTCTTAAGACAACGGTATTACTATGCCACATGGAAAGCTGATGGGACACGGTTTATGATGTTGATCACCTGTGATGGATGTTATTTGATTGACAGAAAGTTTCATTTTCGAAAGGTCCATATGCGGTTTCCTTGCAGATATTTGAATGGGGGCACACCTGAAAAGAATCACCACTATACATTACTTGATGGCGAGATGATAATTGACAAGGATCCACATACACAAAAGCAGGAGAGAAGATACCTTATTTATGATCTGATGGCTATTAATCGAGTTTCTGTGACTGAGCTGCCTTTCTATGAACGTTGGAAACTGCTAGAGAAAGAAGTAATTGAACCTCGTAACATGGAACGTGAGGCTCTTTGCAAGAGTATAAATCCTTATTATCGATATGACTTGGAGCCATTTAGTATGAGGAGGAAGGGTTTTTGGTTACTGTCCACTGTGTCAAAGCTTCTCAATAAATTCATCCCGCAACTCTCCCATCCGTCAGATGGTCTTGTGTTCCAGGGCTGGGATGATCCTTATGTCCCCCGCACACATGAGGGTCTTCTGAAGTGGAAATACCCTGAAATGAACTCAGTTGATTTCCTCTTTGAGTTGGGAGCAGGTGGTCGTTACCTGCTCTTTCTTCATGAACGTGGAAGGAAGAAGTTGATGGAAGGGAATAGGGCTTTTTTAAAAGACGCATCGGATGCATCTTCCTATTCAGGGAAAATCATTGAATGCTACTGGGACCCCAAGGAGAATCATTGGGTCTGTATGCGGATAAGGACTGACAAATCAACTCCGAATGAGATCAATACCTATAGAAAGGTTCTACATACCAATGTAATGCGAAGCATAAAGGATAACATCACAGAAGAAGTTGTTTTGAACGAGATGAATGAGATCATACGCCTGCCCTTGTATGCGGACAGAATAGAAAGGGATATCAAGGCTCACCAACAAATGGTCTCTGCAAAGCGAAAGTGA 1662 0.4164 MMIFSNLEIGLVIDLTNTTRYYPISDWTRERIRHVKIRCKGRDSVPDDESVNRFCNEVLGFLSRRTNTNEYIFVHCTHGHNRTGYMIVHFLVRTESISVTEAMNKFSAARDPGIYKQDYIDALYMYYHERKPEEVVCPQTPEWKRLADPEFHRAVDKSVENIGGVPLHENITRNGVLTNDDVLGDPVHSNQLHSMRLECYQLLKLGTGGRGSLQFPGSHPVSLNRDNVQLLRQRYYYATWKADGTRFMMLITCDGCYLIDRKFHFRKVHMRFPCRYLNGGTPEKNHHYTLLDGEMIIDKDPHTQKQERRYLIYDLMAINRVSVTELPFYERWKLLEKEVIEPRNMEREALCKSINPYYRYDLEPFSMRRKGFWLLSTVSKLLNKFIPQLSHPSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLFELGAGGRYLLFLHERGRKKLMEGNRAFLKDASDASSYSGKIIECYWDPKENHWVCMRIRTDKSTPNEINTYRKVLHTNVMRSIKDNITEEVVLNEMNEIIRLPLYADRIERDIKAHQQMVSAKRK 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2297 553 PIRSF mRNA_capping_HCE 3 553 IPR017074 GO:0004484|GO:0006370|GO:0140818
Prci1g2297 553 ProSitePatterns Tyrosine specific protein phosphatases active site. 74 84 IPR016130 GO:0016311|GO:0016791
Prci1g2297 553 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 6 144 IPR029021 -
Prci1g2297 553 Gene3D Protein tyrosine phosphatase superfamily 2 149 IPR029021 -
Prci1g2297 553 SMART dsp_5 2 129 IPR020422 GO:0006470|GO:0008138
Prci1g2297 553 Pfam mRNA capping enzyme, C-terminal domain 422 520 IPR013846 -
Prci1g2297 553 SUPERFAMILY Nucleic acid-binding proteins 420 538 IPR012340 -
Prci1g2297 553 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 184 418 - -
Prci1g2297 553 CDD Adenylation_mRNA_capping 190 418 IPR001339 GO:0004484|GO:0005524|GO:0006370
Prci1g2297 553 PANTHER MRNA-CAPPING ENZYME 8 534 - -
Prci1g2297 553 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 52 121 IPR000387 GO:0016311|GO:0016791
Prci1g2297 553 FunFam mRNA capping enzyme, putative 178 415 - -
Prci1g2297 553 Pfam Dual specificity phosphatase, catalytic domain 4 127 IPR000340 GO:0008138|GO:0016311
Prci1g2297 553 Pfam mRNA capping enzyme, catalytic domain 219 417 IPR001339 GO:0004484|GO:0005524|GO:0006370
Prci1g2297 553 Gene3D DNA ligase/mRNA capping enzyme 178 417 - -
Prci1g2297 553 Gene3D - 449 530 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2297 Prci-Chr1 43492150 43498428 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2297 8 543 Protein tyrosine phosphatase (PTP) family AT3G09100 62.247 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2297 K13917 - gmx:100778292 923.694