Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1900 ATGAAAGCAGCCACTGCGTTGGGAGCTAAAACTGCAAGAGCTTGTGATAGCTGCCTTCGCCGACGAGCTCGATGGTTCTGCGCAGCCGATGACGCTTTCTTATGCCATGGCTGCGACAATCTGGTTCACTCTGCGAATCAGTTGGCCAGCAGACATGAAAGGGTTCGTCTCCAAACCGCATCGTGCTCCAAAAAGGCAATATCGCAAGTATGGTATAGTGGATTCACACGCAAGGCAAGAACCCCGCGTCATAATAGCAAGCAGTTATTGGCTCAGAAAAAATCCAAACATGAAGAAAAGGGAGCGATTTTTAATAGTAGTATTCTTCCCGTCGTGCCGGAGCTCGGAAGCGAAGAAGGTGGGCTGGACGAGAGTGACGAGCAGTTTCTTTGCCGGGTTCCGGAGTTTGATCCGTTTGAAGACGACCTTTGCAACATCTACAGCGAAGTTGGCGATGAGAGGTTGGACGTTGTGATGAAGAAAGATGATGTGAATGGGGGGCAAGATGAAGCAACATGTGACCTAGACAATTTTTCAGAGTTTCTTGCGTCGGATATGGATCTTGCAGAGTTTGCTGCTGATGTTGAAAGCTTACTGGAAAGTGGGCTTGATGAGTCAGGAGAAGAACTGTTGGATTGTAAGCAAGAAGAAATGATGGAGGCATTAGATGGTACTGTGGTGGGATCAGACAAAAATAGTGCAATGGTAAAGATTAAGGGTGAAGAAGTAGTTGAAGCTAACATGGTTGTAGGCATCACAGGCGAGACCTTAAATTGGAACATACAGACAATACATGGCTCATCATCATCAGTGGAAGAGGAAAAGAAGGTGGAGACGAAGGCAAAGATATTGCTGAGGCTAAACTACGAGGATGTCATAACTGCTTGGGCAAGTCAAGGTTGTCCTTGGACAACAGGAAACCCACCTCAGTTGAACTCTAATGACTGCTGGCCACACTGCTTGGGTTGGAACGGGGGAGATGTTCATCAGTGCTGTTATGGGGAACTGGGGAGCTTAAGGGGACACATAGATGGGGGAAGAGAAGCAAGAGTGTCGAGGTACAGAGAGAAGAGGAGAACACGTTTATTTTCGAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAAAAAAGACCTAGAATGAAAGGTCGGTTTGTGAAGAGGGCTTCCCTTGTTGGAACCACTGCTTTGCCTGCTGCTTCCCGCTGA 1212 0.4719 MKAATALGAKTARACDSCLRRRARWFCAADDAFLCHGCDNLVHSANQLASRHERVRLQTASCSKKAISQVWYSGFTRKARTPRHNSKQLLAQKKSKHEEKGAIFNSSILPVVPELGSEEGGLDESDEQFLCRVPEFDPFEDDLCNIYSEVGDERLDVVMKKDDVNGGQDEATCDLDNFSEFLASDMDLAEFAADVESLLESGLDESGEELLDCKQEEMMEALDGTVVGSDKNSAMVKIKGEEVVEANMVVGITGETLNWNIQTIHGSSSSVEEEKKVETKAKILLRLNYEDVITAWASQGCPWTTGNPPQLNSNDCWPHCLGWNGGDVHQCCYGELGSLRGHIDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASLVGTTALPAASR 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1900 403 SMART bboxneu5 10 57 IPR000315 GO:0008270
Prci1g1900 403 Pfam CCT motif 347 389 IPR010402 GO:0005515
Prci1g1900 403 Pfam B-box zinc finger 12 55 IPR000315 GO:0008270
Prci1g1900 403 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 6 391 - -
Prci1g1900 403 ProSiteProfiles CCT domain profile. 347 389 IPR010402 GO:0005515
Prci1g1900 403 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Prci1g1900 403 CDD Bbox1_BBX-like 14 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1900 Prci-Chr1 39735512 39737971 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1900 4 389 C2C2-CO-like Transcription Factor Family AT1G25440 42.721 1.10e-89 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Prci1g1900 zf-B_box 4.7e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g1900 1 39735512 39737971 Prci1g1900 1 39735512 39737971 ECH