Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0500 ATGCCCAATAAAAAATCTACCTTGCGAAGCACTATTCTCTTGTTACTTTTGCAGGTTTTGAATTTGATGAATGTCGCTCATGTGAGGTGCAAATCTACAATCGAGCCCTGCTCCAACTCTGACTCCTGCAATGCTCTGCTCGGGTATACCCTCTACACTGACCTAAAGGTCTCTGAGGTGGCTTCTCTCTTTCAAATTGACCCAATTGCTCTTCTGACTGCCAATGCCATTGACATTTCTTATCCCGACGTGGAGCATCACATTCTTCCCTCCCGGCTCTTCCTCAAGATCCCTATTGCTTGTTCGTGTGTTGACGGAATTCGCAAATCGGTGTCGACCCACTACAAAACTCGGCCCTCTGACACTCTCTCTTCGATTTCGGATTCGATATATGGTGGTCTGGTGTCTGCTGACCAGCTTAGGGATGCCAATTCGATAAGTGACCCTTCGGTACTGGATGCAGGTCAGAATCTTGTCGTGCCGCTTCCATGCACTTGCTTCAATGGTACCGATAACTCTTTGCCTGCAATCTATCTGTCGTATGTGGTCCAGCCAATCGATACTTTGGCCACAATTGCGGCGAGGTACTTTACCACTCTGACTGATTTGATGAATGTCAATGCCATGGGAAGTTCAGCTATCAACGACGGTGATATTCTCGCTATACCGATACCCGCTTGCGCATCAAATTTCCCAAAATATGCCTCTGATCATGGTTTGCTTGTCCCTAATGGAAGCTACGCCATCACAGCAGGTCACTGCGTGCTATGTAGCTGTGGGCCGCGAAATTTAAATTTATACTGTATGCCTGCTTCTCTGGCTGTATCTTGTTCCAGCATGCAATGTAAAAGAAGCAATCTCATGCTCGGAAATGTTACAGCGCAGCAGAATAGTGGTGGTTGCAGTGTTAGTTCTTGCAATTATGATGGTTTTGCTAATGGCACTATAATAACAGCATTGTCTACATCTCTTCAACCTCGATGCCCAGGGCCGCAACAATTTCCTCCACTTACAGCACCGCCTACTTCTGTTGCGAGGGATTCAGTATTTGCACCAGCACCAGCACCAGCACCTCTGTCAGATGGAGCCGGTAAATCATCACCGAAATCATCAGCTGTGCCAAGGTCGTTCCCAGGGTCCCAACCTGCAAATGGCCCTATTAGTGGGCTTACTTCTGGTGCTTCCGGTGCTTGCTCCTTGGTGAATCCACTACCTGCTTTGACATCTGCGCTTGTGTTTTTGCTTGTCAAGTTGATGATCTCCATGGCATTGTAA 1275 0.4745 MPNKKSTLRSTILLLLLQVLNLMNVAHVRCKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQIDPIALLTANAIDISYPDVEHHILPSRLFLKIPIACSCVDGIRKSVSTHYKTRPSDTLSSISDSIYGGLVSADQLRDANSISDPSVLDAGQNLVVPLPCTCFNGTDNSLPAIYLSYVVQPIDTLATIAARYFTTLTDLMNVNAMGSSAINDGDILAIPIPACASNFPKYASDHGLLVPNGSYAITAGHCVLCSCGPRNLNLYCMPASLAVSCSSMQCKRSNLMLGNVTAQQNSGGCSVSSCNYDGFANGTIITALSTSLQPRCPGPQQFPPLTAPPTSVARDSVFAPAPAPAPLSDGAGKSSPKSSAVPRSFPGSQPANGPISGLTSGASGACSLVNPLPALTSALVFLLVKLMISMAL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0500 424 Gene3D LysM domain 107 168 IPR036779 -
Prci15g0500 424 SMART LysM_2 180 223 IPR018392 -
Prci15g0500 424 SMART LysM_2 114 161 IPR018392 -
Prci15g0500 424 CDD LysM 180 222 IPR018392 -
Prci15g0500 424 ProSiteProfiles LysM domain profile. 179 222 IPR018392 -
Prci15g0500 424 MobiDBLite consensus disorder prediction 364 388 - -
Prci15g0500 424 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 13 332 - -
Prci15g0500 424 SUPERFAMILY LysM domain 179 224 IPR036779 -
Prci15g0500 424 ProSiteProfiles LysM domain profile. 113 160 IPR018392 -
Prci15g0500 424 MobiDBLite consensus disorder prediction 356 388 - -
Prci15g0500 424 CDD LysM 113 160 IPR018392 -
Prci15g0500 424 Gene3D LysM domain 169 231 IPR036779 -
Prci15g0500 424 Pfam LysM domain 115 161 IPR018392 -
Prci15g0500 424 Pfam LysM domain 181 223 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0500 Prci-Chr15 3145928 3148861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0500 31 423 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 66.582 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0500 - - gmx:100808966 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci15g0500 15 3145928 3148861 Prci15g0500 15 3145928 3148861 ECH