Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2580 ATGGTTTTTTCTTCCATGTATCCTTATCTTGATCCGGCCAACTGGCAACAACAGCAACCTGATCGTCAGATTGGAACTGGCGGTGGTCCGAGTTCTCAGCTTCTTCCTCCTCCGCCTCCGCCTCCTACACGGTCTCATGGGGCCGGCGGTTCCGTCTCCATCAGGCCTGGTTCCATGGCTGATAGGGCTCGGATGGCCAACATACCGATGCCGGAGGCGGCGATGAAGTGCCCTCGGTGCGAATCCACCAACACCAAGTTTTGCTACTTCAACAACTATAGCCTCTCTCAGCCTCGCCACTTCTGCAAGACATGTAGAAGGTACTGGACCCGAGGTGGGGCGTTGCGAAATGTGCCGGTCGGTGGGGGATGCCGAAGGAACAAGAGAAGCAAAAGCAGCGGCTCAAAGTCACCACCGGCGAGCTCCGATCCCCAGACGGCCAGTGCTAGTTCAACCAATTCAGTATCTTCTAACAGTGCTTCTGCTGCTGATATAGTAGGCCTTTCGTCTCAGGTTCCGCCTCTGAGGTTCACGGCTCCTTTGCATCAACTAACTGAGTTTGGATCCGGAGATATGGGATTGAACTATGGTTTGAGTAATTACAGCGCAATTTCAGGTCCAGTGGGAGGAGTGGGTGACTTAAGTTTCCATATCGGAACCGCTTTTCCGGGAGGAGCAAGTAGCAGCAGCAGCTCGATCTTATCCGCCGCCGCCGGTTTAGAGCAGTGGCGGCTGCCACAAGCACAACAGTTTCCCTTCTTAGCTGGCTTGGGAGCCTCGCCTGAATTGTACCAATTTGAAAGTGGAGCTGCAGTGCCCAGATATGGTGGCGGCGCAAGTCATCAACCCCGGCCAAAGGTTTCAACTGGGGTGATAACTCAACTAGCTTCAGTGAAAATGGAAGACCATAATCACCGGGAACTAAATTTGTCAAGGCACTTCTTGGGGATAAATAATAATTCGACAGATCATGAGCAGTATTGGAATACTACAGCCGGTAATTCTAATACTGCCGCTCCTAATTGGACTGATCTTTCTGGGTTTAGCTCTTCTTCCACTACTAGCAACAATCCACCACAGGAAAAAATATAA 1092 0.5147 MVFSSMYPYLDPANWQQQQPDRQIGTGGGPSSQLLPPPPPPPTRSHGAGGSVSIRPGSMADRARMANIPMPEAAMKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKSSGSKSPPASSDPQTASASSTNSVSSNSASAADIVGLSSQVPPLRFTAPLHQLTEFGSGDMGLNYGLSNYSAISGPVGGVGDLSFHIGTAFPGGASSSSSSILSAAAGLEQWRLPQAQQFPFLAGLGASPELYQFESGAAVPRYGGGASHQPRPKVSTGVITQLASVKMEDHNHRELNLSRHFLGINNNSTDHEQYWNTTAGNSNTAAPNWTDLSGFSSSSTTSNNPPQEKI 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2580 363 MobiDBLite consensus disorder prediction 133 155 - -
Prci13g2580 363 MobiDBLite consensus disorder prediction 16 56 - -
Prci13g2580 363 Pfam Dof domain, zinc finger 74 129 IPR003851 GO:0003677|GO:0006355
Prci13g2580 363 ProSiteProfiles Zinc finger Dof-type profile. 75 129 IPR003851 GO:0003677|GO:0006355
Prci13g2580 363 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 58 241 IPR045174 GO:0003700|GO:0006355
Prci13g2580 363 MobiDBLite consensus disorder prediction 16 30 - -
Prci13g2580 363 MobiDBLite consensus disorder prediction 119 155 - -
Prci13g2580 363 ProSitePatterns Zinc finger Dof-type signature. 77 113 IPR003851 GO:0003677|GO:0006355
Prci13g2580 363 MobiDBLite consensus disorder prediction 329 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2580 Prci-Chr13 39872302 39874345 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2580 24 354 C2C2-Dof Transcription Factor Family AT3G55370 41.908 3.30e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Prci13g2580 zf-Dof 2.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2580 - - tcc:18597775 379.407