Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0404 ATGATCCAGGAACTGTTAAGCGGTGCAGGCCTCAAAGCAGGCCAAAGGAAAATCTCCACTGATGGAGCCGGGGGAATTTTGCCGCTCATCACTAAATCTCATACTCCTGTCCTTTCTTCTTCTTCTTCATCTCACTCCTCCACCCCCACCACCACTTCTACGGCCACGGTGGCGGCTGCTGCCACCTCGACAAATTCGGAGAACCAGAATCTGAGGTGCCCGCGGTGTGATTCTTCCAACACGAAGTTCTGTTACTACAATAACTACAACCTCACTCAGCCTCGCCACTTCTGCAAAACATGTCGCCGGTACTGGACCAAAGGTGGTGCTCTCAGGAATGTTCCAATTGGTGGTGGTTGCCGGAAGAATAGGAACGTGGGCGCATCCAACTCCGTGGTGAAGACGAGCGTGGCTAAGATGAAAACAGCTTCACCATCAGAGCTTGAAAGGTCGGTGCTCGGGGTGGCCGGGTTCATCGACCACGACCTTGCTTCAAACCCGATTCCATGGGGCTCGCCTCAAAATTCTCACGTGTTAGCTTTGCTGAGAGCTGGTCAAAACCATAACCCTAACCCTATCTCTAGTCTTCCCATATCCGTCAATGCTGTTAAGGAAGAAGGGGACTTGATGGTGTCTGAAACAGTAGTTGGAAATGGGATAATTAATGGTCGAGCCCTAAACTTCGATTCTGCTAGGCAATTCCCCGCGCTTGGGCTCTGCAGCTCTATCTGGAGAAGCAGTACTAATAATAATGATAATAATAATAATAATAATAATCAAGATGGCCGGTCCATAGTTGGAGAGCACGAGGGCAGTGGAATTCAAGAAATTTACCAGAGGCTAAGGTCATCAGCAGCAGGTAATTATTGTAGCGACAATAACTCGTCACAGGTGTTTCTGGGGAACATGGCTTCTTCTTCCCATGCATCTTCTTCTATATCTGCTAATTTGGAGTCAGCTCCGGCAGTTGCTGCGGACGATCAATTGGGGTACACATGGAATCCAACCCTTTCGTGGTTTGATCTTTCCACCACCAATGGTACTGCATATCCTTAA 1056 0.4877 MIQELLSGAGLKAGQRKISTDGAGGILPLITKSHTPVLSSSSSSHSSTPTTTSTATVAAAATSTNSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNRNVGASNSVVKTSVAKMKTASPSELERSVLGVAGFIDHDLASNPIPWGSPQNSHVLALLRAGQNHNPNPISSLPISVNAVKEEGDLMVSETVVGNGIINGRALNFDSARQFPALGLCSSIWRSSTNNNDNNNNNNNQDGRSIVGEHEGSGIQEIYQRLRSSAAGNYCSDNNSSQVFLGNMASSSHASSSISANLESAPAVAADDQLGYTWNPTLSWFDLSTTNGTAYP 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0404 351 Pfam Dof domain, zinc finger 69 125 IPR003851 GO:0003677|GO:0006355
Prci10g0404 351 MobiDBLite consensus disorder prediction 248 267 - -
Prci10g0404 351 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 53 256 IPR045174 GO:0003700|GO:0006355
Prci10g0404 351 ProSitePatterns Zinc finger Dof-type signature. 73 109 IPR003851 GO:0003677|GO:0006355
Prci10g0404 351 MobiDBLite consensus disorder prediction 36 71 - -
Prci10g0404 351 ProSiteProfiles Zinc finger Dof-type profile. 71 125 IPR003851 GO:0003677|GO:0006355
Prci10g0404 351 MobiDBLite consensus disorder prediction 248 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0404 Prci-Chr10 2705701 2707295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0404 44 158 C2C2-Dof Transcription Factor Family AT5G60200 51.261 1.03e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Prci10g0404 zf-Dof 9.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0404 - - gmx:778100 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0404 10 2705701 2707295 Prci10g0404 10 2705701 2707295 ECH