Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral841g00002 ATGCTGCATCAGAAGCCCATTTTGCGAAGCTCTTTCCTTTTGTTACTTTTACAGGTCTTAATCAAAGTTGCTCTCGTGAGTTCCAAATCTACTATCGAGCCTTGCTCAAACTCCGACTCCTGTAATGCCCTGCTTGGCTACACTGTTTACACTGATCTAAAGGTCTCTGAGCTGGCTTCCCTCTTTCAAATCGACCCCATTGCTCTTCTCACCGCCAATGCCATCGACATTTCGTACCCTGACGTAGAGCACCACATTCTTCCTTCCCAACTCTTCCTTAAAATCCCCATTACCTGTTCGTGCGTTGACGGAATTCGTAAATCAGTGTCGACCCATTACAGAACTCGGCCCTCTGATACTCTTTCATCGATTGCAGACTCTATATATGGTGGTCTGGTGTCTGCTGACCAGCTTAGGGAGGCGAACTCCATAACCGACCCTTCAGTACTGGATGTGGGTCAGAGCCTTGTGGTGCCTCTTCCATGCACTTGCTTCAATGGGACCGATAACTCTTTGCCTGCAATTTACCTGTCGTACGTGGTGCAGCCCATCGACACTTTGGCTGCGATTGCTGCACGGTATTCCACCACTCTTACTGATTTGATGGATGTTAACGCCTTGGGGAGCACGGCTATCAGCGACGGCGATATTCTTGCTATTCCTATCCCAGCCTGCGCATCAAATTTTCCAAATTATTCCGCTGATTATGGTTTGCTTGTCCCCAATGGAAGTTATGCGATTACAGCGAGCCACTGTATGCAGTGTAGCTGTGGACCACAAAATCTGAATTTGTACTGTATGCCTGCTTCTCTGGCCGTTTCTTGTTCTAGCATGCAATGTAAAAACAGCAACCTTATGGTTGGGAATGTTACAGCACAACAAAGTAGTGCTGGCTGCAATGTTACTTCTTGTAGTTATGATGGTTTTGTAAATGGCACAATTATAACAGCATTGACCACTTCTCTTCAGCCTCGATGCCCAGGTTCGCAGAAATTTCCCCCACTCATAGCGCCACCTACGACTGTTACCAGGATTTCAGAATTTGCACCATCACCGTCACCTCAGTCATATGCAGGTGGTCCAATGAACCCGAAATCATCAGTGGTGCCTTCGACCGGGTCAGTTCCTGGATTCACCCCTGCTAATGGGCCAGCCAGTGGCCTGCTGTCTGGTGCTTCTGCTGCAAGCTCCTTGATGAATCCTATTCCCACTTTGACATCTGCTCTTGTGTTACTGTCTGTCAACTTGTTGATCTCTGTAGCATAG 1266 0.4771 MLHQKPILRSSFLLLLLQVLIKVALVSSKSTIEPCSNSDSCNALLGYTVYTDLKVSELASLFQIDPIALLTANAIDISYPDVEHHILPSQLFLKIPITCSCVDGIRKSVSTHYRTRPSDTLSSIADSIYGGLVSADQLREANSITDPSVLDVGQSLVVPLPCTCFNGTDNSLPAIYLSYVVQPIDTLAAIAARYSTTLTDLMDVNALGSTAISDGDILAIPIPACASNFPNYSADYGLLVPNGSYAITASHCMQCSCGPQNLNLYCMPASLAVSCSSMQCKNSNLMVGNVTAQQSSAGCNVTSCSYDGFVNGTIITALTTSLQPRCPGSQKFPPLIAPPTTVTRISEFAPSPSPQSYAGGPMNPKSSVVPSTGSVPGFTPANGPASGLLSGASAASSLMNPIPTLTSALVLLSVNLLISVA 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral841g00002 421 ProSiteProfiles LysM domain profile. 111 158 IPR018392 -
Pral841g00002 421 ProSiteProfiles LysM domain profile. 177 220 IPR018392 -
Pral841g00002 421 MobiDBLite consensus disorder prediction 351 370 - -
Pral841g00002 421 CDD LysM 178 220 IPR018392 -
Pral841g00002 421 SUPERFAMILY LysM domain 177 222 IPR036779 -
Pral841g00002 421 Gene3D LysM domain 168 229 IPR036779 -
Pral841g00002 421 Gene3D LysM domain 105 166 IPR036779 -
Pral841g00002 421 SUPERFAMILY LysM domain 111 160 IPR036779 -
Pral841g00002 421 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 13 330 - -
Pral841g00002 421 SMART LysM_2 112 159 IPR018392 -
Pral841g00002 421 SMART LysM_2 178 221 IPR018392 -
Pral841g00002 421 Pfam LysM domain 179 221 IPR018392 -
Pral841g00002 421 Pfam LysM domain 113 159 IPR018392 -
Pral841g00002 421 CDD LysM 111 158 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral841g00002 Pral-Chr841 29423 32960 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral841g00002 4 396 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 68.861 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral841g00002 - - qsa:O6P43_019748 651.358