Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5620g00028 ATGCAAGACCCAATGGCATTCCAGCCGATGAAACCCCAGTTTCCCGAACAAGAACAGCTTAAATGTCCGCGTTGTGATTCTACCAACACCAAATTCTGCTACTACAACAACTATAATCTCTCCCAGCCACGCCATTTTTGCAAGAATTGCAGAAGGTATTGGACCAAAGGCGGTGCTCTTCGAAACATACCAGTCGGTGGTGGAAGCCGAAAGAACACCAAACGATCGTCGACCACCAAACGCCCTTCTGCTGCTGCTGCTTCTTCAGCATCATCTCCTCCTGCATCGGTTCCACCTGCCTCAACAGCTCGTCCGGATCCTGACCCGACCCGGTTTTATGCCAACCCCAGTGGTCCCCCGCGCATCGGTGGGAGTTTCAGTTCCCTTCTGGCATCAACGTGGGGAGGTTTATTCGAGGGTCTGAATCCAAATGGGTCTGGTTTGAAAATGATGCAACTGCATGAATTTGGGGAGAATGTGGGTTCTGGCCATGCGAAGAATTCGGATTCGGGCCGAAACTCAGGGCCGGAAAGGCAGAGCAATGGTAATTCGGAGAGCTTTCTCGGTAAGCAAAATGTTGATTCAAGCTGTTGGAATGGTAGTAGCAATGGGTGGTCTGATCTTGCAATATATACGCCAGGCTCAAGCTATCAGTAG 657 0.5053 MQDPMAFQPMKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNTKRSSTTKRPSAAAASSASSPPASVPPASTARPDPDPTRFYANPSGPPRIGGSFSSLLASTWGGLFEGLNPNGSGLKMMQLHEFGENVGSGHAKNSDSGRNSGPERQSNGNSESFLGKQNVDSSCWNGSSNGWSDLAIYTPGSSYQ 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5620g00028 218 MobiDBLite consensus disorder prediction 61 119 - -
Pral5620g00028 218 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Pral5620g00028 218 MobiDBLite consensus disorder prediction 159 193 - -
Pral5620g00028 218 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Pral5620g00028 218 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Pral5620g00028 218 MobiDBLite consensus disorder prediction 163 193 - -
Pral5620g00028 218 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 165 IPR045174 GO:0003700|GO:0006355
Pral5620g00028 218 MobiDBLite consensus disorder prediction 69 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5620g00028 Pral-Chr5620 137867 139486 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5620g00028 11 138 C2C2-Dof Transcription Factor Family AT1G51700 58.824 2.33e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pral5620g00028 zf-Dof 2.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5620g00028 - - gmx:100798927 292.737