Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5515g00012 ATGAACGGCAAGCCTCAGCCTCAGCCTCAGCAACCCCAGAAGTGCCCTCGGTGTGATTCTCTCAACACCAAGTTCTGCTACTACAACAACTATAGCCTCTCGCAGCCTCGTTATTTTTGCAAGGCATGTCGAAGGTACTGGACCCAAGGCGGAACCTTGAGGAACGTCCGCGTCGGCGGTGGCTGTCGCAAGCCCAAGCGAAGCAAAGGCTCGGCTTCTTCTTCGTCTTCCACCGACACTAGTTCTGCCCCGTCGTTGTCGCAACCACCGCGAGAGGCGGAGGTAATGAAGGACCCTTCCGCCGCGAGTCCTGCTTCTGTGGCTACTACCGCGGCGGTTCCATCAATCGGCCCCTTTTATCAAGACGGTGCCTGTGGTGATGGTGGGTATTTGTCGTCTCTGGCAGCGATTCAATCCTTGAATCCATCACAGCCGTTCAATCAGATGGGTCCTTGTCCTAATTTGAGTCTACTTTCTGGGTTCGGTGCTCCTTCTCTGGACTCGTCAATCCGTCCGCCGCTACCATTTTATCAGATGGGTGTTATCAGACACAAGGAGGAAGAGAGACTGTATGAAGCAGACCAAGTTTTGATTCAATCAACTACGGCCAATAGCGGTTCTGCTTCGACTCACCATGATTGGACTGAAAGCTTCATCAATAACATCAACCATAGGGGATCTGATGCCTCTCTGTGGAGCACTACCATGAGTACCGCTTCCGCCAGTGGAAATTCTCAGAATCATAATGATACTGTTGCAGGGTGCTTCTTTTCTGGTTGA 780 0.5205 MNGKPQPQPQQPQKCPRCDSLNTKFCYYNNYSLSQPRYFCKACRRYWTQGGTLRNVRVGGGCRKPKRSKGSASSSSSTDTSSAPSLSQPPREAEVMKDPSAASPASVATTAAVPSIGPFYQDGACGDGGYLSSLAAIQSLNPSQPFNQMGPCPNLSLLSGFGAPSLDSSIRPPLPFYQMGVIRHKEEERLYEADQVLIQSTTANSGSASTHHDWTESFINNINHRGSDASLWSTTMSTASASGNSQNHNDTVAGCFFSG 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5515g00012 259 ProSiteProfiles Zinc finger Dof-type profile. 13 67 IPR003851 GO:0003677|GO:0006355
Pral5515g00012 259 Pfam Dof domain, zinc finger 11 67 IPR003851 GO:0003677|GO:0006355
Pral5515g00012 259 MobiDBLite consensus disorder prediction 68 88 - -
Pral5515g00012 259 ProSitePatterns Zinc finger Dof-type signature. 15 51 IPR003851 GO:0003677|GO:0006355
Pral5515g00012 259 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 199 IPR045174 GO:0003700|GO:0006355
Pral5515g00012 259 MobiDBLite consensus disorder prediction 58 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5515g00012 Pral-Chr5515 44672 46856 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5515g00012 1 149 C2C2-Dof Transcription Factor Family AT4G21050 47.403 6.76e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pral5515g00012 zf-Dof 1.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5515g00012 - - pcin:129305063 399.438