Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5395g00041 ATGGATCCTTCTAATGGACAACACCAGCAAATGCCTAGCCAGTCACTGGAAAATATGTTGGCTTGTTCAAAGGCACAGAATCAAGAGAGAAAGCCAAGACCTCAACCTGAACAAGCCCTGAATTGTCCGAGATGCGACTCTACGAACACCAAATTTTGTTACTACAACAATTACAGCCTCTCCCAGCCACGATATTTCTGCAAGTCTTGCAGAAGATATTGGACCAAAGGAGGAACTCTGAGGAATGTTCCAGTGGGTGGAGGCTGCAGGAAGAACAAAAGGTCCTCGTCATCTTCTACATCATCAAAAAGGGCTCAGGATCAATCACTAACACCCAATTCCAATCCACTCATCACTACACTCCGTCCATTATCATATGACCCCAATGACCTCACTCTTGCACTGGCTAGACTCCAGAAGCAGTCTTGCGGACACATGGGTTTTGATGACCATGATTATTCAGGGATGGGAAATTCTGTTGGAAACTTCTCTTCCACAAATACTGGATTTTTAGATGCACTTCGCGGTGGATTCCTTGAAACACAGAGTAGTAATCTTCAGAATCTGTACTATGGATATGGAAATGGGGACTTGGGAGAGGTGGACAACGGAAGTAACAGTAATGCTTGTGGAATTACTGGGGCTAGTGGAGAGATGATGCTTCCATTTGATCAAGAAGTGAGTAAAGCCACTACTCAGGCAGTCACTGTCACTACCATGAAGCAAGAAATCTACAATGGCAGACAACAAGGTGATACCAAGGTTTTGTGGGGTCTTCCATGGCAGCTTAATGGAGACACAAGCATGGGTGAAATTGATTCCGGGAGAGCGAATTGGAACAGTCTCACGTCATCTTGGCACGGGCTTCTTAATAGTCCCCTAATGTAA 888 0.4505 MDPSNGQHQQMPSQSLENMLACSKAQNQERKPRPQPEQALNCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSTSSKRAQDQSLTPNSNPLITTLRPLSYDPNDLTLALARLQKQSCGHMGFDDHDYSGMGNSVGNFSSTNTGFLDALRGGFLETQSSNLQNLYYGYGNGDLGEVDNGSNSNACGITGASGEMMLPFDQEVSKATTQAVTVTTMKQEIYNGRQQGDTKVLWGLPWQLNGDTSMGEIDSGRANWNSLTSSWHGLLNSPLM 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5395g00041 295 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Pral5395g00041 295 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 193 IPR045174 GO:0003700|GO:0006355
Pral5395g00041 295 Pfam Dof domain, zinc finger 38 94 IPR003851 GO:0003677|GO:0006355
Pral5395g00041 295 MobiDBLite consensus disorder prediction 91 121 - -
Pral5395g00041 295 MobiDBLite consensus disorder prediction 84 121 - -
Pral5395g00041 295 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Pral5395g00041 295 MobiDBLite consensus disorder prediction 1 34 - -
Pral5395g00041 295 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5395g00041 Pral-Chr5395 240019 242193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5395g00041 38 295 C2C2-Dof Transcription Factor Family AT2G28510 41.429 1.47e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pral5395g00041 zf-Dof 8.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5395g00041 - - qsa:O6P43_000286 431.795