Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5351g00045 ATGCCAAATAAAGCATCCGCCTTGCGAAGCACTGTCATTTTGTTACTTTTGCAGGTTTTGAATTTGATCAATGTCGGTGATGTCAGTTGTAAATCTACAATCGAGCCCTGCTCCAACTCTGACTCCTGCAATGCTCTGCTCGGATATACCCTCTACACTGACCTAAAGGTCTCTGAGGTGGCCTCCCTCTTTCAAATCGACCCAATTGCTCTTCTCACTGCTAATGCCATTGACATTTCTTATCCCGACGTGGAGCATCACATTCTTCCCTCTCGGCTCTTCCTCAAAATCCCTATGACTTGTTCGTGTGTTGATGGAATTCGCAAATCAGTATCGACCCACTACAAAACTCGTCCCTCTGATACTCTATCTTCGATCGCGGATTCAATATATGGGGGTCTGGTGTCTGCTGACCAGCTTAGGGAAGCCAATTCGATAAGTGACCCTTCTGTACTGGATGCGGGTCAGAATCTTGTGGTGCCGCTACCATGCACTTGCTTCAATGGTACCGATAACACTTTGCCTGCAATCTACCTGTCGTATGTGGTCCAGCCAATCGATACTTTGGCCGCGATCGCCGCGAGGTATTTCACCACTCTGACTGACTTGATGAACGTCAATGCCATGGGAAGTTCAGCTATCAACGATGGCGATATTCTCGCTATACCCATACCCGCTTGCGCGTCAAATTTCCCAAAATTTGCCTCTGATCATGGCCTGCTTGTACCTAACGGAAGCTACGCCGTCACAGCTGGTCACTGTGTACTATGTAGCTGTGGGCCACGAAATTTAAATTTATACTGTATGCCTGCTTCTCTGGCTGTTTCTTGTTCAAGCATGCAATGTAAAAGAAGCAATCTCATGCTCGGAAATGTTACAGCCCAACAGGGTGGTGGCGGCTGCAGTGTTAATTCTTGCAATTATAACGGTTTTGCTAATGGCACTATAATAACAGCGTTGTCTACATCTCTTCAACCTCGATGTCCTGGGCCGCAGCAATTTCCTCCACTCACGGCACCGCCTACTACAGTTCCGAGAGCTTCAATATTTGCGCCAGCACCATCACCTGTGTCAAATGGAGCTGGTCCTTTATCACCCAAATCATCAGTGGTACCGGCGACGGGGTCATTTCCAGGGGTCCACCCTGCAAATGGCCCGATTAGTGGCCTTACTTCTGGTGCTTCCCATGCTTGCTCTTTAGTGAATCCTTTGCCTGCTTTGACATCTTCGCTTGTGTTCTTGCTTGTCAAGTTGATGATCTCCATGGGATTGTAA 1275 0.4784 MPNKASALRSTVILLLLQVLNLINVGDVSCKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQIDPIALLTANAIDISYPDVEHHILPSRLFLKIPMTCSCVDGIRKSVSTHYKTRPSDTLSSIADSIYGGLVSADQLREANSISDPSVLDAGQNLVVPLPCTCFNGTDNTLPAIYLSYVVQPIDTLAAIAARYFTTLTDLMNVNAMGSSAINDGDILAIPIPACASNFPKFASDHGLLVPNGSYAVTAGHCVLCSCGPRNLNLYCMPASLAVSCSSMQCKRSNLMLGNVTAQQGGGGCSVNSCNYNGFANGTIITALSTSLQPRCPGPQQFPPLTAPPTTVPRASIFAPAPSPVSNGAGPLSPKSSVVPATGSFPGVHPANGPISGLTSGASHACSLVNPLPALTSSLVFLLVKLMISMGL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5351g00045 424 Gene3D LysM domain 107 168 IPR036779 -
Pral5351g00045 424 ProSiteProfiles LysM domain profile. 113 160 IPR018392 -
Pral5351g00045 424 CDD LysM 180 222 IPR018392 -
Pral5351g00045 424 Pfam LysM domain 115 161 IPR018392 -
Pral5351g00045 424 Pfam LysM domain 181 223 IPR018392 -
Pral5351g00045 424 ProSiteProfiles LysM domain profile. 179 222 IPR018392 -
Pral5351g00045 424 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 22 332 - -
Pral5351g00045 424 SUPERFAMILY LysM domain 113 162 IPR036779 -
Pral5351g00045 424 SUPERFAMILY LysM domain 179 224 IPR036779 -
Pral5351g00045 424 SMART LysM_2 180 223 IPR018392 -
Pral5351g00045 424 SMART LysM_2 114 161 IPR018392 -
Pral5351g00045 424 CDD LysM 113 160 IPR018392 -
Pral5351g00045 424 Gene3D LysM domain 170 231 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5351g00045 Pral-Chr5351 243865 246285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5351g00045 31 399 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 70.889 0.0 547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5351g00045 - - gmx:100808966 677.167