Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5246g00052 ATGGTTTTTTCTTCCATGCATCCTTATCTTGATCCGGCCAACTGGCATCAACAGCAACCCAATCATCAGGTTGGAAGTAGCAGTGGCCCGGGTTCTCAGCTTCTTCCTCCTCCTCCGCCGCCGCTGCCCCCTACTCAGGCTCATGGTGCCAGTGGCTCCGGCTCCATCAGGCCTGGTTCCATGGCTGATAGGGCTCGGATGGCCAACATACCCATGCCGGAGGCGGCGCTAAAATGCCCTCGCTGTGATTCCGCCAATACTAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCTCGCCACTTCTGCAAGACCTGTAGAAGGTACTGGACTCGAGGCGGGGCCCTTCGAAGTGTCCCGGTCGGTGGGGGTTGCCGGAGGAACAAGAGAAGCAAAGGAAGCAGCTCAAAGTCGTCGCCGGTGAGCTCAGATTGCCACACAGGCAGTGCTAGTTCAACCAACTCAGCGTCTTCCAACAGTGCTTCTGCTGCTGATATAGTTGGCCTTTCGCCTCAGGTTCCATCGCTGAGGTTCTCGGCTCCTTTGCATCAACTCACAGAGTTTGGATCCGGAGAGATGCGATTGAACTATGGTTTGAGTAATTATAGCGCAATTTCAGGTCCAATGGGAGGAGTAGGTGACTTGAGTTTCCATATAGGAAACGCTTTGGCAGGGGGAGCAAGCGGCAGCGGCGGAGGTTTGGAGCAGTGGCGGATGCCACAAACACAACAATTTCCCTTCTTAACTGGTTTGGAAGCTTCGCCTGAATTGTACCAATTTGAAGGTGGAGCTACGGTGCCGGGATATGGCGGCGGCTCAAGTCAACTCCGGCCAAGGGTGCCAACTGGCGTAATAACTCAACTAGCTTCAGTGAAAATGGAAGACCATAATCACCGGGAACCGAATTTTTCAAGGCACTTCTTGGGGATGAATAACAATTCAACAAATCACGAGCAGTATTGGAATACTACAGCCGGTAATTCTAATACTGCTGCTGCTAATTGGACTGACCTTTCCGGGTTTATCTCTTCTTCCGCTACTAGCAGCAATCCGCCATAG 1062 0.5235 MVFSSMHPYLDPANWHQQQPNHQVGSSSGPGSQLLPPPPPPLPPTQAHGASGSGSIRPGSMADRARMANIPMPEAALKCPRCDSANTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKGSSSKSSPVSSDCHTGSASSTNSASSNSASAADIVGLSPQVPSLRFSAPLHQLTEFGSGEMRLNYGLSNYSAISGPMGGVGDLSFHIGNALAGGASGSGGGLEQWRMPQTQQFPFLTGLEASPELYQFEGGATVPGYGGGSSQLRPRVPTGVITQLASVKMEDHNHREPNFSRHFLGMNNNSTNHEQYWNTTAGNSNTAAANWTDLSGFISSSATSSNPP 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5246g00052 353 MobiDBLite consensus disorder prediction 11 31 - -
Pral5246g00052 353 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 58 266 IPR045174 GO:0003700|GO:0006355
Pral5246g00052 353 MobiDBLite consensus disorder prediction 121 159 - -
Pral5246g00052 353 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677|GO:0006355
Pral5246g00052 353 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
Pral5246g00052 353 MobiDBLite consensus disorder prediction 135 159 - -
Pral5246g00052 353 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
Pral5246g00052 353 MobiDBLite consensus disorder prediction 11 60 - -
Pral5246g00052 353 MobiDBLite consensus disorder prediction 32 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5246g00052 Pral-Chr5246 365525 367289 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5246g00052 56 324 C2C2-Dof Transcription Factor Family AT5G02460 43.218 4.80e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pral5246g00052 zf-Dof 5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5246g00052 - - tcc:18597775 363.614